Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VLO entry

There are 4 chains in PDB entry 6VLO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	TYR 317
B	GLY -1	TYR 317
C	MET 1	ASN 318
D	MET 1	ARG 314

There are 48 helices in PDB entry 6VLO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	25	Right-handed alpha
Helix 2	AA2	A	41	45	Right-handed 310
Helix 3	AA3	A	60	71	Right-handed alpha
Helix 4	AA4	A	90	100	Right-handed alpha
Helix 5	AA5	A	100	114	Right-handed alpha
Helix 6	AA6	A	147	168	Right-handed alpha
Helix 7	AA7	A	188	199	Right-handed alpha
Helix 8	AA8	A	218	232	Right-handed alpha
Helix 9	AA9	A	248	260	Right-handed alpha
Helix 10	AB1	A	284	290	Right-handed alpha
Helix 11	AB2	A	298	314	Right-handed alpha
Helix 12	AB3	A	315	317	Right-handed 310
Helix 13	AB4	B	11	25	Right-handed alpha
Helix 14	AB5	B	41	45	Right-handed 310
Helix 15	AB6	B	60	71	Right-handed alpha
Helix 16	AB7	B	90	100	Right-handed alpha
Helix 17	AB8	B	100	114	Right-handed alpha
Helix 18	AB9	B	147	168	Right-handed alpha
Helix 19	AC1	B	188	199	Right-handed alpha
Helix 20	AC2	B	218	232	Right-handed alpha
Helix 21	AC3	B	248	260	Right-handed alpha
Helix 22	AC4	B	284	290	Right-handed alpha
Helix 23	AC5	B	298	314	Right-handed alpha
Helix 24	AC6	B	315	317	Right-handed 310
Helix 25	AC7	C	11	25	Right-handed alpha
Helix 26	AC8	C	41	45	Right-handed 310
Helix 27	AC9	C	60	71	Right-handed alpha
Helix 28	AD1	C	90	100	Right-handed alpha
Helix 29	AD2	C	100	114	Right-handed alpha
Helix 30	AD3	C	147	168	Right-handed alpha
Helix 31	AD4	C	188	200	Right-handed alpha
Helix 32	AD5	C	218	232	Right-handed alpha
Helix 33	AD6	C	248	260	Right-handed alpha
Helix 34	AD7	C	284	290	Right-handed alpha
Helix 35	AD8	C	298	314	Right-handed alpha
Helix 36	AD9	C	315	318	Right-handed 310
Helix 37	AE1	D	11	25	Right-handed alpha
Helix 38	AE2	D	41	45	Right-handed 310
Helix 39	AE3	D	60	71	Right-handed alpha
Helix 40	AE4	D	92	100	Right-handed alpha
Helix 41	AE5	D	100	114	Right-handed alpha
Helix 42	AE6	D	147	168	Right-handed alpha
Helix 43	AE7	D	188	200	Right-handed alpha
Helix 44	AE8	D	218	232	Right-handed alpha
Helix 45	AE9	D	248	260	Right-handed alpha
Helix 46	AF1	D	263	265	Right-handed 310
Helix 47	AF2	D	284	290	Right-handed alpha
Helix 48	AF3	D	298	314	Right-handed alpha

There are 14 sheets in PDB entry 6VLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	29	34	parallel
Strand 3	A	3	7	parallel
Strand 4	A	75	78	parallel
Strand 5	A	118	124	parallel
Strand 6	A	171	176	parallel
Strand 7	A	237	240	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	B	139	143	anti-parallel
Strand 4	B	129	131	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	212	217	parallel
Strand 3	A	245	247	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	206	first strand
Strand 2	A	267	270	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	55	first strand
Strand 2	B	29	34	parallel
Strand 3	B	3	7	parallel
Strand 4	B	75	78	parallel
Strand 5	B	118	124	parallel
Strand 6	B	171	176	parallel
Strand 7	B	237	240	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	212	217	parallel
Strand 3	B	245	247	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	206	first strand
Strand 2	B	267	270	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	29	34	parallel
Strand 3	C	3	7	parallel
Strand 4	C	75	78	parallel
Strand 5	C	118	124	parallel
Strand 6	C	171	176	parallel
Strand 7	C	237	240	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	141	143	anti-parallel
Strand 3	D	139	143	anti-parallel
Strand 4	D	129	131	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	180	first strand
Strand 2	C	212	217	parallel
Strand 3	C	245	247	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	206	first strand
Strand 2	C	267	270	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	55	first strand
Strand 2	D	29	34	parallel
Strand 3	D	3	7	parallel
Strand 4	D	75	78	parallel
Strand 5	D	118	124	parallel
Strand 6	D	171	176	parallel
Strand 7	D	237	240	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	180	first strand
Strand 2	D	212	217	parallel
Strand 3	D	245	247	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	206	first strand
Strand 2	D	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VLO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLO