Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VLR entry

There are 14 chains in PDB entry 6VLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 35ARG 503
B
 ILE 515LEU 663
H
 TRP 35ARG 503
J
 GLY 521LEU 663
G
 TRP 35ARG 503
I
 GLY 521LEU 663
C
 GLN 1SER 113
L
 THR 5SER 107
D
 GLN 1SER 113
K
 THR 5SER 107
E
 GLN 1SER 113
M
 THR 5SER 107
F
 GLU 1SER 113
N
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6VLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 116Right-handed alpha
Helix 2
AA2
A
122 126Right-handed 310
Helix 3
AA3
A
335 350Right-handed alpha
Helix 4
AA4
A
351 353Right-handed 310
Helix 5
AA5
A
368 373Right-handed alpha
Helix 6
AA6
A
387 391Right-handed 310
Helix 7
AA7
A
474 478Right-handed 310
Helix 8
AA8
A
479 484Right-handed alpha
Helix 9
AA9
B
529 534Right-handed alpha
Helix 10
AB1
B
536 542Right-handed alpha
Helix 11
AB2
B
572 596Right-handed alpha
Helix 12
AB3
B
618 626Right-handed alpha
Helix 13
AB4
B
627 635Right-handed alpha
Helix 14
AB5
B
638 662Right-handed alpha
Helix 15
AB6
H
98 117Right-handed alpha
Helix 16
AB7
H
122 126Right-handed 310
Helix 17
AB8
H
335 350Right-handed alpha
Helix 18
AB9
H
351 353Right-handed 310
Helix 19
AC1
H
368 373Right-handed alpha
Helix 20
AC2
H
387 391Right-handed 310
Helix 21
AC3
H
476 484Right-handed alpha
Helix 22
AC4
J
523 528Right-handed 310
Helix 23
AC5
J
529 534Right-handed alpha
Helix 24
AC6
J
536 542Right-handed alpha
Helix 25
AC7
J
572 596Right-handed alpha
Helix 26
AC8
J
618 626Right-handed alpha
Helix 27
AC9
J
627 635Right-handed alpha
Helix 28
AD1
J
638 662Right-handed alpha
Helix 29
AD2
G
99 117Right-handed alpha
Helix 30
AD3
G
122 126Right-handed 310
Helix 31
AD4
G
335 350Right-handed alpha
Helix 32
AD5
G
351 353Right-handed 310
Helix 33
AD6
G
368 373Right-handed alpha
Helix 34
AD7
G
387 391Right-handed 310
Helix 35
AD8
G
474 478Right-handed 310
Helix 36
AD9
G
479 484Right-handed alpha
Helix 37
AE1
I
523 528Right-handed 310
Helix 38
AE2
I
529 534Right-handed alpha
Helix 39
AE3
I
536 542Right-handed alpha
Helix 40
AE4
I
571 596Right-handed alpha
Helix 41
AE5
I
618 626Right-handed alpha
Helix 42
AE6
I
627 635Right-handed alpha
Helix 43
AE7
I
638 662Right-handed alpha
Helix 44
AE8
C
28 32Right-handed 310
Helix 45
AE9
C
63 65Right-handed 310
Helix 46
AF1
C
83 87Right-handed 310
Helix 47
AF2
L
79 83Right-handed 310
Helix 48
AF3
D
83 87Right-handed 310
Helix 49
AF4
K
79 83Right-handed 310
Helix 50
AF5
E
28 32Right-handed 310
Helix 51
AF6
E
63 65Right-handed 310
Helix 52
AF7
E
83 87Right-handed 310
Helix 53
AF8
M
79 83Right-handed 310
Helix 54
AF9
F
72 75Right-handed 310
Helix 55
AG1
F
83 87Right-handed 310
Helix 56
AG2
N
79 83Right-handed 310
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