Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VLT entry

There are 8 chains in PDB entry 6VLT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 28	ILE 490
B	LYS 28	HIS 491
C	LYS 28	HIS 491
D	LYS 28	HIS 491
E	LYS 28	HIS 491
F	LYS 28	HIS 491
G	LYS 28	ILE 490
H	LYS 28	ILE 490

There are161 helices in PDB entry 6VLT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	46	Right-handed alpha
Helix 2	AA2	A	49	62	Right-handed alpha
Helix 3	AA3	A	79	88	Right-handed alpha
Helix 4	AA4	A	100	107	Right-handed alpha
Helix 5	AA5	A	116	132	Right-handed alpha
Helix 6	AA6	A	140	159	Right-handed alpha
Helix 7	AA7	A	166	184	Right-handed alpha
Helix 8	AA8	A	191	210	Right-handed alpha
Helix 9	AA9	A	210	219	Right-handed alpha
Helix 10	AB1	A	221	226	Right-handed alpha
Helix 11	AB2	A	228	254	Right-handed alpha
Helix 12	AB3	A	262	273	Right-handed alpha
Helix 13	AB4	A	283	316	Right-handed alpha
Helix 14	AB5	A	316	331	Right-handed alpha
Helix 15	AB6	A	338	344	Right-handed 310
Helix 16	AB7	A	345	360	Right-handed alpha
Helix 17	AB8	A	391	396	Right-handed alpha
Helix 18	AB9	A	408	413	Right-handed 310
Helix 19	AC1	A	430	434	Right-handed 310
Helix 20	AC2	A	437	456	Right-handed alpha
Helix 21	AC3	B	41	46	Right-handed alpha
Helix 22	AC4	B	49	62	Right-handed alpha
Helix 23	AC5	B	79	88	Right-handed alpha
Helix 24	AC6	B	100	107	Right-handed alpha
Helix 25	AC7	B	116	131	Right-handed alpha
Helix 26	AC8	B	141	158	Right-handed alpha
Helix 27	AC9	B	166	183	Right-handed alpha
Helix 28	AD1	B	191	209	Right-handed alpha
Helix 29	AD2	B	210	219	Right-handed alpha
Helix 30	AD3	B	219	226	Right-handed alpha
Helix 31	AD4	B	228	252	Right-handed alpha
Helix 32	AD5	B	262	274	Right-handed alpha
Helix 33	AD6	B	283	316	Right-handed alpha
Helix 34	AD7	B	316	331	Right-handed alpha
Helix 35	AD8	B	338	344	Right-handed 310
Helix 36	AD9	B	345	360	Right-handed alpha
Helix 37	AE1	B	390	396	Right-handed alpha
Helix 38	AE2	B	408	413	Right-handed 310
Helix 39	AE3	B	430	434	Right-handed 310
Helix 40	AE4	B	437	455	Right-handed alpha
Helix 41	AE5	C	41	46	Right-handed alpha
Helix 42	AE6	C	49	62	Right-handed alpha
Helix 43	AE7	C	79	88	Right-handed alpha
Helix 44	AE8	C	100	107	Right-handed alpha
Helix 45	AE9	C	116	132	Right-handed alpha
Helix 46	AF1	C	140	158	Right-handed alpha
Helix 47	AF2	C	166	184	Right-handed alpha
Helix 48	AF3	C	191	209	Right-handed alpha
Helix 49	AF4	C	210	219	Right-handed alpha
Helix 50	AF5	C	219	226	Right-handed alpha
Helix 51	AF6	C	228	253	Right-handed alpha
Helix 52	AF7	C	262	273	Right-handed alpha
Helix 53	AF8	C	283	316	Right-handed alpha
Helix 54	AF9	C	316	331	Right-handed alpha
Helix 55	AG1	C	338	344	Right-handed 310
Helix 56	AG2	C	345	360	Right-handed alpha
Helix 57	AG3	C	390	396	Right-handed alpha
Helix 58	AG4	C	408	413	Right-handed 310
Helix 59	AG5	C	430	434	Right-handed 310
Helix 60	AG6	C	437	455	Right-handed alpha
Helix 61	AG7	D	41	46	Right-handed alpha
Helix 62	AG8	D	49	62	Right-handed alpha
Helix 63	AG9	D	79	88	Right-handed alpha
Helix 64	AH1	D	100	107	Right-handed alpha
Helix 65	AH2	D	111	115	Right-handed 310
Helix 66	AH3	D	116	133	Right-handed alpha
Helix 67	AH4	D	140	158	Right-handed alpha
Helix 68	AH5	D	166	184	Right-handed alpha
Helix 69	AH6	D	191	210	Right-handed alpha
Helix 70	AH7	D	210	218	Right-handed alpha
Helix 71	AH8	D	219	226	Right-handed alpha
Helix 72	AH9	D	228	250	Right-handed alpha
Helix 73	AI1	D	262	273	Right-handed alpha
Helix 74	AI2	D	283	316	Right-handed alpha
Helix 75	AI3	D	316	331	Right-handed alpha
Helix 76	AI4	D	338	344	Right-handed 310
Helix 77	AI5	D	345	359	Right-handed alpha
Helix 78	AI6	D	390	396	Right-handed alpha
Helix 79	AI7	D	408	413	Right-handed 310
Helix 80	AI8	D	430	434	Right-handed 310
Helix 81	AI9	D	437	455	Right-handed alpha
Helix 82	AJ1	E	41	46	Right-handed alpha
Helix 83	AJ2	E	49	62	Right-handed alpha
Helix 84	AJ3	E	80	88	Right-handed alpha
Helix 85	AJ4	E	90	95	Right-handed 310
Helix 86	AJ5	E	100	107	Right-handed alpha
Helix 87	AJ6	E	116	132	Right-handed alpha
Helix 88	AJ7	E	140	158	Right-handed alpha
Helix 89	AJ8	E	166	184	Right-handed alpha
Helix 90	AJ9	E	191	209	Right-handed alpha
Helix 91	AK1	E	210	219	Right-handed alpha
Helix 92	AK2	E	221	226	Right-handed alpha
Helix 93	AK3	E	228	250	Right-handed alpha
Helix 94	AK4	E	262	274	Right-handed alpha
Helix 95	AK5	E	283	316	Right-handed alpha
Helix 96	AK6	E	316	331	Right-handed alpha
Helix 97	AK7	E	338	344	Right-handed 310
Helix 98	AK8	E	345	360	Right-handed alpha
Helix 99	AK9	E	391	396	Right-handed alpha
Helix 100	AL1	E	408	411	Right-handed 310
Helix 101	AL2	E	437	455	Right-handed alpha
Helix 102	AL3	F	41	46	Right-handed alpha
Helix 103	AL4	F	49	62	Right-handed alpha
Helix 104	AL5	F	79	88	Right-handed alpha
Helix 105	AL6	F	100	107	Right-handed alpha
Helix 106	AL7	F	116	132	Right-handed alpha
Helix 107	AL8	F	140	158	Right-handed alpha
Helix 108	AL9	F	168	184	Right-handed alpha
Helix 109	AM1	F	191	210	Right-handed alpha
Helix 110	AM2	F	210	219	Right-handed alpha
Helix 111	AM3	F	220	226	Right-handed alpha
Helix 112	AM4	F	228	253	Right-handed alpha
Helix 113	AM5	F	262	273	Right-handed alpha
Helix 114	AM6	F	283	315	Right-handed alpha
Helix 115	AM7	F	316	331	Right-handed alpha
Helix 116	AM8	F	338	344	Right-handed 310
Helix 117	AM9	F	345	360	Right-handed alpha
Helix 118	AN1	F	390	396	Right-handed alpha
Helix 119	AN2	F	408	413	Right-handed 310
Helix 120	AN3	F	437	455	Right-handed alpha
Helix 121	AN4	G	41	46	Right-handed alpha
Helix 122	AN5	G	49	62	Right-handed alpha
Helix 123	AN6	G	79	88	Right-handed alpha
Helix 124	AN7	G	100	107	Right-handed alpha
Helix 125	AN8	G	116	132	Right-handed alpha
Helix 126	AN9	G	140	158	Right-handed alpha
Helix 127	AO1	G	165	167	Right-handed 310
Helix 128	AO2	G	168	184	Right-handed alpha
Helix 129	AO3	G	191	210	Right-handed alpha
Helix 130	AO4	G	210	219	Right-handed alpha
Helix 131	AO5	G	220	226	Right-handed alpha
Helix 132	AO6	G	228	254	Right-handed alpha
Helix 133	AO7	G	262	273	Right-handed alpha
Helix 134	AO8	G	283	316	Right-handed alpha
Helix 135	AO9	G	316	331	Right-handed alpha
Helix 136	AP1	G	338	344	Right-handed 310
Helix 137	AP2	G	345	360	Right-handed alpha
Helix 138	AP3	G	391	396	Right-handed alpha
Helix 139	AP4	G	408	413	Right-handed 310
Helix 140	AP5	G	430	434	Right-handed 310
Helix 141	AP6	G	437	455	Right-handed alpha
Helix 142	AP7	H	41	46	Right-handed alpha
Helix 143	AP8	H	49	62	Right-handed alpha
Helix 144	AP9	H	79	88	Right-handed alpha
Helix 145	AQ1	H	100	107	Right-handed alpha
Helix 146	AQ2	H	116	131	Right-handed alpha
Helix 147	AQ3	H	140	158	Right-handed alpha
Helix 148	AQ4	H	166	184	Right-handed alpha
Helix 149	AQ5	H	191	210	Right-handed alpha
Helix 150	AQ6	H	210	219	Right-handed alpha
Helix 151	AQ7	H	221	226	Right-handed alpha
Helix 152	AQ8	H	228	255	Right-handed alpha
Helix 153	AQ9	H	262	273	Right-handed alpha
Helix 154	AR1	H	283	316	Right-handed alpha
Helix 155	AR2	H	316	331	Right-handed alpha
Helix 156	AR3	H	338	344	Right-handed 310
Helix 157	AR4	H	345	360	Right-handed alpha
Helix 158	AR5	H	390	396	Right-handed alpha
Helix 159	AR6	H	408	411	Right-handed 310
Helix 160	AR7	H	430	434	Right-handed 310
Helix 161	AR8	H	437	455	Right-handed alpha

There are 19 sheets in PDB entry 6VLT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	69	first strand
Strand 2	A	72	77	anti-parallel
Strand 3	A	386	389	parallel
Strand 4	A	368	369	anti-parallel
Strand 5	A	96	97	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	460	first strand
Strand 2	A	485	488	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	69	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	386	389	parallel
Strand 4	B	368	369	anti-parallel
Strand 5	B	96	97	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	460	first strand
Strand 2	B	485	489	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	69	first strand
Strand 2	C	72	77	anti-parallel
Strand 3	C	386	389	parallel
Strand 4	C	368	369	anti-parallel
Strand 5	C	96	97	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	460	first strand
Strand 2	C	485	489	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	69	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	386	389	parallel
Strand 4	D	368	369	anti-parallel
Strand 5	D	96	97	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	485	489	anti-parallel
Strand 3	D	456	460	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	69	first strand
Strand 2	E	72	78	anti-parallel
Strand 3	E	386	390	parallel
Strand 4	E	368	369	anti-parallel
Strand 5	E	96	97	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	413	414	first strand
Strand 2	E	418	419	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	456	460	first strand
Strand 2	E	485	489	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	69	first strand
Strand 2	F	72	77	anti-parallel
Strand 3	F	386	389	parallel
Strand 4	F	368	369	anti-parallel
Strand 5	F	96	97	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	164	first strand
Strand 2	F	485	489	anti-parallel
Strand 3	F	456	460	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	69	first strand
Strand 2	G	72	77	anti-parallel
Strand 3	G	386	389	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	97	first strand
Strand 2	G	368	369	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	164	first strand
Strand 2	G	485	489	anti-parallel
Strand 3	G	456	460	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	69	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	386	389	parallel
Strand 4	H	368	369	anti-parallel
Strand 5	H	96	97	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	413	414	first strand
Strand 2	H	418	419	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	456	460	first strand
Strand 2	H	485	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VLT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLT