Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VLX entry

There are 2 chains in PDB entry 6VLX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 275
B
 ALA 2ASP 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6VLX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 33Right-handed alpha
Helix 2
AA2
A
42 48Right-handed alpha
Helix 3
AA3
A
49 58Right-handed alpha
Helix 4
AA4
A
69 85Right-handed alpha
Helix 5
AA5
A
98 103Right-handed alpha
Helix 6
AA6
A
106 110Right-handed 310
Helix 7
AA7
A
111 123Right-handed alpha
Helix 8
AA8
A
123 136Right-handed alpha
Helix 9
AA9
A
150 154Right-handed 310
Helix 10
AB1
A
162 186Right-handed alpha
Helix 11
AB2
A
211 219Right-handed alpha
Helix 12
AB3
A
225 238Right-handed alpha
Helix 13
AB4
A
239 242Right-handed 310
Helix 14
AB5
A
254 258Right-handed 310
Helix 15
AB6
A
261 275Right-handed alpha
Helix 16
AB7
B
21 33Right-handed alpha
Helix 17
AB8
B
42 48Right-handed alpha
Helix 18
AB9
B
50 52Right-handed 310
Helix 19
AC1
B
53 58Right-handed alpha
Helix 20
AC2
B
69 85Right-handed alpha
Helix 21
AC3
B
98 103Right-handed alpha
Helix 22
AC4
B
106 110Right-handed 310
Helix 23
AC5
B
111 123Right-handed alpha
Helix 24
AC6
B
123 136Right-handed alpha
Helix 25
AC7
B
150 154Right-handed 310
Helix 26
AC8
B
161 186Right-handed alpha
Helix 27
AC9
B
208 219Right-handed alpha
Helix 28
AD1
B
225 238Right-handed alpha
Helix 29
AD2
B
239 242Right-handed 310
Helix 30
AD3
B
254 258Right-handed 310
Helix 31
AD4
B
261 274Right-handed alpha
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There are 2 sheets in PDB entry 6VLX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
36 41parallel
Strand 3
A
10 14parallel
Strand 4
A
88 93parallel
Strand 5
A
139 149parallel
Strand 6
A
188 194parallel
Strand 7
A
248 251parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
35 41parallel
Strand 3
B
9 14parallel
Strand 4
B
88 93parallel
Strand 5
B
139 149parallel
Strand 6
B
188 194parallel
Strand 7
B
248 251parallel
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