Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VLY entry

There are 4 chains in PDB entry 6VLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -8PHE 284
B
 TYR 3GLU 286
C
 TYR 3GLY 285
D
 TYR 3GLU 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 61 helices in PDB entry 6VLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 33Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
50 58Right-handed alpha
Helix 4
AA4
A
69 85Right-handed alpha
Helix 5
AA5
A
98 103Right-handed alpha
Helix 6
AA6
A
106 110Right-handed 310
Helix 7
AA7
A
111 123Right-handed alpha
Helix 8
AA8
A
123 136Right-handed alpha
Helix 9
AA9
A
150 154Right-handed 310
Helix 10
AB1
A
161 186Right-handed alpha
Helix 11
AB2
A
199 204Right-handed alpha
Helix 12
AB3
A
207 219Right-handed alpha
Helix 13
AB4
A
225 238Right-handed alpha
Helix 14
AB5
A
239 242Right-handed 310
Helix 15
AB6
A
254 256Right-handed 310
Helix 16
AB7
B
21 33Right-handed alpha
Helix 17
AB8
B
42 49Right-handed alpha
Helix 18
AB9
B
50 58Right-handed alpha
Helix 19
AC1
B
69 85Right-handed alpha
Helix 20
AC2
B
98 103Right-handed alpha
Helix 21
AC3
B
106 110Right-handed 310
Helix 22
AC4
B
111 123Right-handed alpha
Helix 23
AC5
B
123 136Right-handed alpha
Helix 24
AC6
B
150 154Right-handed 310
Helix 25
AC7
B
161 186Right-handed alpha
Helix 26
AC8
B
199 204Right-handed alpha
Helix 27
AC9
B
207 219Right-handed alpha
Helix 28
AD1
B
225 238Right-handed alpha
Helix 29
AD2
B
239 242Right-handed 310
Helix 30
AD3
B
254 256Right-handed 310
Helix 31
AD4
C
21 33Right-handed alpha
Helix 32
AD5
C
42 49Right-handed alpha
Helix 33
AD6
C
50 58Right-handed alpha
Helix 34
AD7
C
69 85Right-handed alpha
Helix 35
AD8
C
98 103Right-handed alpha
Helix 36
AD9
C
106 110Right-handed 310
Helix 37
AE1
C
111 123Right-handed alpha
Helix 38
AE2
C
123 136Right-handed alpha
Helix 39
AE3
C
150 154Right-handed 310
Helix 40
AE4
C
161 186Right-handed alpha
Helix 41
AE5
C
199 204Right-handed alpha
Helix 42
AE6
C
207 219Right-handed alpha
Helix 43
AE7
C
225 238Right-handed alpha
Helix 44
AE8
C
239 242Right-handed 310
Helix 45
AE9
C
254 256Right-handed 310
Helix 46
AF1
C
261 265Right-handed 310
Helix 47
AF2
D
21 33Right-handed alpha
Helix 48
AF3
D
42 49Right-handed alpha
Helix 49
AF4
D
50 58Right-handed alpha
Helix 50
AF5
D
69 85Right-handed alpha
Helix 51
AF6
D
98 103Right-handed alpha
Helix 52
AF7
D
106 110Right-handed 310
Helix 53
AF8
D
111 123Right-handed alpha
Helix 54
AF9
D
123 136Right-handed alpha
Helix 55
AG1
D
150 154Right-handed 310
Helix 56
AG2
D
161 186Right-handed alpha
Helix 57
AG3
D
199 204Right-handed alpha
Helix 58
AG4
D
207 219Right-handed alpha
Helix 59
AG5
D
225 238Right-handed alpha
Helix 60
AG6
D
239 242Right-handed 310
Helix 61
AG7
D
254 256Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 6VLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
36 41parallel
Strand 3
A
10 14parallel
Strand 4
A
88 93parallel
Strand 5
A
139 149parallel
Strand 6
A
188 194parallel
Strand 7
A
248 251parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
C
258 260parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
C
156 157parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
36 41parallel
Strand 3
B
10 14parallel
Strand 4
B
88 93parallel
Strand 5
B
139 149parallel
Strand 6
B
188 194parallel
Strand 7
B
248 251parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
D
258 260parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
D
156 157parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
36 41parallel
Strand 3
C
10 14parallel
Strand 4
C
88 93parallel
Strand 5
C
139 149parallel
Strand 6
C
188 194parallel
Strand 7
C
248 251parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 64first strand
Strand 2
D
36 41parallel
Strand 3
D
10 14parallel
Strand 4
D
88 93parallel
Strand 5
D
139 149parallel
Strand 6
D
188 194parallel
Strand 7
D
248 251parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il