Analysis of interatomic Contacts of Structural Units in PDB entry:
6VM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VM0 entry

There are 5 chains in PDB entry 6VM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 31	GLN 444
E	PRO 31	GLN 444
C	PRO 31	GLN 444
B	PRO 31	GLN 444
D	PRO 31	GLN 444

There are 30 helices in PDB entry 6VM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	41	Right-handed alpha
Helix 2	AA2	A	244	251	Right-handed alpha
Helix 3	AA3	A	251	265	Right-handed alpha
Helix 4	AA4	A	272	295	Right-handed alpha
Helix 5	AA5	A	305	340	Right-handed alpha
Helix 6	AA6	A	395	444	Right-handed alpha
Helix 7	AA7	E	33	41	Right-handed alpha
Helix 8	AA8	E	244	251	Right-handed alpha
Helix 9	AA9	E	251	265	Right-handed alpha
Helix 10	AB1	E	272	295	Right-handed alpha
Helix 11	AB2	E	305	340	Right-handed alpha
Helix 12	AB3	E	395	444	Right-handed alpha
Helix 13	AB4	C	33	41	Right-handed alpha
Helix 14	AB5	C	244	251	Right-handed alpha
Helix 15	AB6	C	251	265	Right-handed alpha
Helix 16	AB7	C	272	295	Right-handed alpha
Helix 17	AB8	C	305	340	Right-handed alpha
Helix 18	AB9	C	395	444	Right-handed alpha
Helix 19	AC1	B	33	41	Right-handed alpha
Helix 20	AC2	B	244	251	Right-handed alpha
Helix 21	AC3	B	251	265	Right-handed alpha
Helix 22	AC4	B	272	295	Right-handed alpha
Helix 23	AC5	B	305	340	Right-handed alpha
Helix 24	AC6	B	395	444	Right-handed alpha
Helix 25	AC7	D	33	41	Right-handed alpha
Helix 26	AC8	D	244	251	Right-handed alpha
Helix 27	AC9	D	251	265	Right-handed alpha
Helix 28	AD1	D	272	295	Right-handed alpha
Helix 29	AD2	D	305	340	Right-handed alpha
Helix 30	AD3	D	395	444	Right-handed alpha

There are 25 sheets in PDB entry 6VM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	140	144	anti-parallel
Strand 3	A	149	161	anti-parallel
Strand 4	A	81	93	anti-parallel
Strand 5	A	61	76	anti-parallel
Strand 6	A	190	194	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	132	first strand
Strand 2	A	149	161	anti-parallel
Strand 3	A	81	93	anti-parallel
Strand 4	A	61	76	anti-parallel
Strand 5	A	200	202	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	173	181	anti-parallel
Strand 3	A	233	242	anti-parallel
Strand 4	A	211	213	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	173	181	anti-parallel
Strand 3	A	233	242	anti-parallel
Strand 4	A	218	219	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	230	231	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	109	first strand
Strand 2	E	140	144	anti-parallel
Strand 3	E	149	161	anti-parallel
Strand 4	E	81	93	anti-parallel
Strand 5	E	61	76	anti-parallel
Strand 6	E	190	194	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	132	first strand
Strand 2	E	149	161	anti-parallel
Strand 3	E	81	93	anti-parallel
Strand 4	E	61	76	anti-parallel
Strand 5	E	200	202	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	124	first strand
Strand 2	E	173	181	anti-parallel
Strand 3	E	233	242	anti-parallel
Strand 4	E	211	213	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	124	first strand
Strand 2	E	173	181	anti-parallel
Strand 3	E	233	242	anti-parallel
Strand 4	E	218	219	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	225	first strand
Strand 2	E	230	231	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	140	144	anti-parallel
Strand 3	C	149	161	anti-parallel
Strand 4	C	81	93	anti-parallel
Strand 5	C	61	76	anti-parallel
Strand 6	C	190	194	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	149	161	anti-parallel
Strand 3	C	81	93	anti-parallel
Strand 4	C	61	76	anti-parallel
Strand 5	C	200	202	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	173	181	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	211	213	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	173	181	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	218	219	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	230	231	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	140	144	anti-parallel
Strand 3	B	149	161	anti-parallel
Strand 4	B	81	93	anti-parallel
Strand 5	B	61	76	anti-parallel
Strand 6	B	190	194	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	132	first strand
Strand 2	B	149	161	anti-parallel
Strand 3	B	81	93	anti-parallel
Strand 4	B	61	76	anti-parallel
Strand 5	B	200	202	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	173	181	anti-parallel
Strand 3	B	233	242	anti-parallel
Strand 4	B	211	213	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	173	181	anti-parallel
Strand 3	B	233	242	anti-parallel
Strand 4	B	218	219	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	230	231	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	D	140	144	anti-parallel
Strand 3	D	149	161	anti-parallel
Strand 4	D	81	93	anti-parallel
Strand 5	D	61	76	anti-parallel
Strand 6	D	190	194	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	132	first strand
Strand 2	D	149	161	anti-parallel
Strand 3	D	81	93	anti-parallel
Strand 4	D	61	76	anti-parallel
Strand 5	D	200	202	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	173	181	anti-parallel
Strand 3	D	233	242	anti-parallel
Strand 4	D	211	213	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	173	181	anti-parallel
Strand 3	D	233	242	anti-parallel
Strand 4	D	218	219	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	230	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VM0