Analysis of interatomic Contacts of Structural Units in PDB entry:
6VM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VM1 entry

There are 26 chains in PDB entry 6VM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 10	GLN 504
B	ASP 7	GLN 504
C	THR 3	LEU 503
D	LYS 17	LEU 496
E	LYS 17	SER 494
F	LYS 18	LEU 496
I	SER 35	ILE 182
J	LEU 90	PRO 220
a	VAL 22	GLU 244
d	SER 73	GLU 249
e	LEU 3	THR 131
g	ASN 43	ALA 358
R	PRO 3	VAL 81
Q	PRO 3	VAL 81
P	PRO 3	VAL 81
O	PRO 3	VAL 81
N	PRO 3	VAL 81
M	PRO 3	VAL 81
Z	PRO 3	VAL 81
Y	PRO 3	VAL 81
X	PRO 3	VAL 81
W	PRO 3	VAL 81
V	PRO 3	VAL 81
U	PRO 3	VAL 81
T	PRO 3	VAL 81
S	PRO 3	VAL 81

There are158 helices in PDB entry 6VM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	57	59	Right-handed 310
Helix 3	AA3	A	151	158	Right-handed alpha
Helix 4	AA4	A	175	189	Right-handed alpha
Helix 5	AA5	A	202	217	Right-handed alpha
Helix 6	AA6	A	217	222	Right-handed alpha
Helix 7	AA7	A	232	237	Right-handed alpha
Helix 8	AA8	A	238	254	Right-handed alpha
Helix 9	AA9	A	264	279	Right-handed alpha
Helix 10	AB1	A	283	287	Right-handed 310
Helix 11	AB2	A	289	301	Right-handed alpha
Helix 12	AB3	A	329	339	Right-handed alpha
Helix 13	AB4	A	346	352	Right-handed alpha
Helix 14	AB5	A	373	393	Right-handed alpha
Helix 15	AB6	A	394	397	Right-handed 310
Helix 16	AB7	A	404	420	Right-handed alpha
Helix 17	AB8	A	430	444	Right-handed alpha
Helix 18	AB9	A	444	449	Right-handed alpha
Helix 19	AC1	A	452	469	Right-handed alpha
Helix 20	AC2	A	469	480	Right-handed alpha
Helix 21	AC3	A	483	503	Right-handed alpha
Helix 22	AC4	B	11	19	Right-handed alpha
Helix 23	AC5	B	101	105	Right-handed 310
Helix 24	AC6	B	151	158	Right-handed alpha
Helix 25	AC7	B	177	188	Right-handed alpha
Helix 26	AC8	B	202	217	Right-handed alpha
Helix 27	AC9	B	232	252	Right-handed alpha
Helix 28	AD1	B	264	279	Right-handed alpha
Helix 29	AD2	B	289	300	Right-handed alpha
Helix 30	AD3	B	329	339	Right-handed alpha
Helix 31	AD4	B	346	352	Right-handed alpha
Helix 32	AD5	B	383	397	Right-handed alpha
Helix 33	AD6	B	404	421	Right-handed alpha
Helix 34	AD7	B	430	441	Right-handed alpha
Helix 35	AD8	B	450	469	Right-handed alpha
Helix 36	AD9	B	469	480	Right-handed alpha
Helix 37	AE1	B	483	504	Right-handed alpha
Helix 38	AE2	C	8	18	Right-handed alpha
Helix 39	AE3	C	151	156	Right-handed alpha
Helix 40	AE4	C	175	185	Right-handed alpha
Helix 41	AE5	C	186	190	Right-handed 310
Helix 42	AE6	C	202	215	Right-handed alpha
Helix 43	AE7	C	217	221	Right-handed alpha
Helix 44	AE8	C	232	237	Right-handed alpha
Helix 45	AE9	C	238	249	Right-handed alpha
Helix 46	AF1	C	264	279	Right-handed alpha
Helix 47	AF2	C	289	300	Right-handed alpha
Helix 48	AF3	C	329	339	Right-handed alpha
Helix 49	AF4	C	380	395	Right-handed alpha
Helix 50	AF5	C	407	422	Right-handed alpha
Helix 51	AF6	C	430	444	Right-handed alpha
Helix 52	AF7	C	445	449	Right-handed 310
Helix 53	AF8	C	450	469	Right-handed alpha
Helix 54	AF9	C	471	477	Right-handed alpha
Helix 55	AG1	C	483	501	Right-handed alpha
Helix 56	AG2	D	102	106	Right-handed 310
Helix 57	AG3	D	153	160	Right-handed alpha
Helix 58	AG4	D	177	193	Right-handed alpha
Helix 59	AG5	D	205	219	Right-handed alpha
Helix 60	AG6	D	245	261	Right-handed alpha
Helix 61	AG7	D	274	284	Right-handed alpha
Helix 62	AG8	D	285	290	Right-handed 310
Helix 63	AG9	D	301	313	Right-handed alpha
Helix 64	AH1	D	337	346	Right-handed alpha
Helix 65	AH2	D	381	409	Right-handed alpha
Helix 66	AH3	D	414	432	Right-handed alpha
Helix 67	AH4	D	435	437	Right-handed 310
Helix 68	AH5	D	438	443	Right-handed alpha
Helix 69	AH6	D	450	464	Right-handed alpha
Helix 70	AH7	D	471	475	Right-handed 310
Helix 71	AH8	D	479	496	Right-handed alpha
Helix 72	AH9	E	103	106	Right-handed 310
Helix 73	AI1	E	178	190	Right-handed alpha
Helix 74	AI2	E	206	220	Right-handed alpha
Helix 75	AI3	E	226	231	Right-handed 310
Helix 76	AI4	E	242	262	Right-handed alpha
Helix 77	AI5	E	276	290	Right-handed alpha
Helix 78	AI6	E	301	312	Right-handed alpha
Helix 79	AI7	E	336	346	Right-handed alpha
Helix 80	AI8	E	355	360	Right-handed alpha
Helix 81	AI9	E	376	381	Right-handed alpha
Helix 82	AJ1	E	381	409	Right-handed alpha
Helix 83	AJ2	E	410	413	Right-handed 310
Helix 84	AJ3	E	414	431	Right-handed alpha
Helix 85	AJ4	E	437	441	Right-handed 310
Helix 86	AJ5	E	450	462	Right-handed alpha
Helix 87	AJ6	E	470	475	Right-handed alpha
Helix 88	AJ7	E	479	493	Right-handed alpha
Helix 89	AJ8	F	102	106	Right-handed 310
Helix 90	AJ9	F	153	159	Right-handed alpha
Helix 91	AK1	F	177	191	Right-handed alpha
Helix 92	AK2	F	205	220	Right-handed alpha
Helix 93	AK3	F	243	262	Right-handed alpha
Helix 94	AK4	F	274	290	Right-handed alpha
Helix 95	AK5	F	300	312	Right-handed alpha
Helix 96	AK6	F	336	344	Right-handed alpha
Helix 97	AK7	F	353	359	Right-handed alpha
Helix 98	AK8	F	376	381	Right-handed alpha
Helix 99	AK9	F	383	409	Right-handed alpha
Helix 100	AL1	F	414	432	Right-handed alpha
Helix 101	AL2	F	437	442	Right-handed alpha
Helix 102	AL3	F	450	464	Right-handed alpha
Helix 103	AL4	F	479	495	Right-handed alpha
Helix 104	AL5	I	36	159	Right-handed alpha
Helix 105	AL6	I	160	182	Right-handed alpha
Helix 106	AL7	J	91	109	Right-handed alpha
Helix 107	AL8	J	110	202	Right-handed alpha
Helix 108	AL9	J	203	218	Right-handed alpha
Helix 109	AM1	a	37	57	Right-handed alpha
Helix 110	AM2	a	68	87	Right-handed alpha
Helix 111	AM3	a	90	115	Right-handed alpha
Helix 112	AM4	a	133	155	Right-handed alpha
Helix 113	AM5	a	171	208	Right-handed alpha
Helix 114	AM6	a	213	244	Right-handed alpha
Helix 115	AM7	d	74	89	Right-handed alpha
Helix 116	AM8	d	91	108	Right-handed alpha
Helix 117	AM9	d	110	116	Right-handed alpha
Helix 118	AN1	d	121	137	Right-handed alpha
Helix 119	AN2	d	139	153	Right-handed alpha
Helix 120	AN3	d	157	174	Right-handed alpha
Helix 121	AN4	d	187	201	Right-handed alpha
Helix 122	AN5	d	237	249	Right-handed alpha
Helix 123	AN6	e	88	105	Right-handed alpha
Helix 124	AN7	e	108	128	Right-handed alpha
Helix 125	AN8	g	44	82	Right-handed alpha
Helix 126	AN9	g	82	99	Right-handed alpha
Helix 127	AO1	g	132	152	Right-handed alpha
Helix 128	AO2	g	161	171	Right-handed alpha
Helix 129	AO3	g	187	202	Right-handed alpha
Helix 130	AO4	g	287	356	Right-handed alpha
Helix 131	AO5	R	4	42	Right-handed alpha
Helix 132	AO6	R	45	75	Right-handed alpha
Helix 133	AO7	Q	4	42	Right-handed alpha
Helix 134	AO8	Q	45	75	Right-handed alpha
Helix 135	AO9	P	4	42	Right-handed alpha
Helix 136	AP1	P	45	75	Right-handed alpha
Helix 137	AP2	O	4	42	Right-handed alpha
Helix 138	AP3	O	45	75	Right-handed alpha
Helix 139	AP4	N	4	42	Right-handed alpha
Helix 140	AP5	N	45	75	Right-handed alpha
Helix 141	AP6	M	4	42	Right-handed alpha
Helix 142	AP7	M	45	75	Right-handed alpha
Helix 143	AP8	Z	4	42	Right-handed alpha
Helix 144	AP9	Z	45	75	Right-handed alpha
Helix 145	AQ1	Y	4	42	Right-handed alpha
Helix 146	AQ2	Y	45	75	Right-handed alpha
Helix 147	AQ3	X	4	42	Right-handed alpha
Helix 148	AQ4	X	45	75	Right-handed alpha
Helix 149	AQ5	W	4	42	Right-handed alpha
Helix 150	AQ6	W	45	75	Right-handed alpha
Helix 151	AQ7	V	4	42	Right-handed alpha
Helix 152	AQ8	V	45	75	Right-handed alpha
Helix 153	AQ9	U	4	42	Right-handed alpha
Helix 154	AR1	U	45	75	Right-handed alpha
Helix 155	AR2	T	4	42	Right-handed alpha
Helix 156	AR3	T	45	75	Right-handed alpha
Helix 157	AR4	S	4	42	Right-handed alpha
Helix 158	AR5	S	45	75	Right-handed alpha

There are 35 sheets in PDB entry 6VM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	40	44	anti-parallel
Strand 3	A	73	74	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	128	129	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	114	115	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	166	170	parallel
Strand 3	A	341	344	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	74	77	anti-parallel
Strand 3	B	61	64	anti-parallel
Strand 4	B	53	55	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	126	129	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	109	110	anti-parallel
Strand 3	B	223	226	parallel
Strand 4	B	193	197	parallel
Strand 5	B	257	263	parallel
Strand 6	B	314	320	parallel
Strand 7	B	167	169	parallel
Strand 8	B	342	344	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	36	first strand
Strand 2	C	39	44	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	74	75	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	126	129	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	224	first strand
Strand 2	C	194	198	parallel
Strand 3	C	257	262	parallel
Strand 4	C	314	321	parallel
Strand 5	C	167	170	parallel
Strand 6	C	342	343	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	30	34	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	61	70	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	130	131	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	322	325	parallel
Strand 3	D	269	272	parallel
Strand 4	D	197	200	parallel
Strand 5	D	232	235	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	327	328	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	75	77	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	47	first strand
Strand 2	E	63	64	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	128	129	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	112	first strand
Strand 2	E	116	117	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	E	162	163	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	198	first strand
Strand 2	E	268	271	parallel
Strand 3	E	322	324	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	91	93	anti-parallel
Strand 3	F	45	49	anti-parallel
Strand 4	F	61	67	anti-parallel
Strand 5	F	75	78	anti-parallel
Strand 6	F	30	33	anti-parallel
Strand 7	F	23	27	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	130	131	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	112	first strand
Strand 2	F	116	117	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	171	first strand
Strand 2	F	349	351	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	235	first strand
Strand 2	F	197	201	parallel
Strand 3	F	269	273	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	175	177	first strand
Strand 2	d	206	208	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	222	223	first strand
Strand 2	d	233	234	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	7	8	first strand
Strand 2	e	75	81	parallel
Strand 3	e	62	69	anti-parallel
Strand 4	e	40	43	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	49	52	first strand
Strand 2	e	57	60	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	118	122	first strand
Strand 2	g	155	159	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	212	213	first strand
Strand 2	g	227	228	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	251	255	first strand
Strand 2	g	268	272	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	258	260	first strand
Strand 2	g	263	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VM1