Analysis of interatomic Contacts of Structural Units in PDB entry:
6VM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VM4 entry

There are 26 chains in PDB entry 6VM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 7LEU 503
B
ILE 4GLN 504
C
THR 3GLN 504
D
LYS 18LEU 496
E
LYS 17LEU 496
F
LYS 17SER 494
I
THR 29ILE 182
J
ASP 85PRO 220
a
GLY 23GLU 244
d
VAL 71GLU 249
e
LEU 3THR 131
g
ASN 43CYS 363
V
PRO 3VAL 81
U
PRO 3VAL 81
T
PRO 3VAL 81
S
PRO 3VAL 81
R
PRO 3VAL 81
Q
PRO 3VAL 81
P
PRO 3VAL 81
O
PRO 3VAL 81
N
PRO 3VAL 81
M
PRO 3VAL 81
Z
PRO 3VAL 81
Y
PRO 3VAL 81
X
PRO 3VAL 81
W
PRO 3VAL 81
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are169 helices in PDB entry 6VM4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
101 105Right-handed 310
Helix 3
AA3
A
151 157Right-handed alpha
Helix 4
AA4
A
175 187Right-handed alpha
Helix 5
AA5
A
202 216Right-handed alpha
Helix 6
AA6
A
232 252Right-handed alpha
Helix 7
AA7
A
263 278Right-handed alpha
Helix 8
AA8
A
283 287Right-handed 310
Helix 9
AA9
A
289 300Right-handed alpha
Helix 10
AB1
A
329 339Right-handed alpha
Helix 11
AB2
A
346 351Right-handed alpha
Helix 12
AB3
A
373 395Right-handed alpha
Helix 13
AB4
A
396 401Right-handed alpha
Helix 14
AB5
A
404 422Right-handed alpha
Helix 15
AB6
A
430 444Right-handed alpha
Helix 16
AB7
A
445 448Right-handed 310
Helix 17
AB8
A
450 468Right-handed alpha
Helix 18
AB9
A
469 480Right-handed alpha
Helix 19
AC1
A
483 503Right-handed alpha
Helix 20
AC2
B
11 19Right-handed alpha
Helix 21
AC3
B
57 59Right-handed 310
Helix 22
AC4
B
101 105Right-handed 310
Helix 23
AC5
B
151 158Right-handed alpha
Helix 24
AC6
B
175 187Right-handed alpha
Helix 25
AC7
B
202 216Right-handed alpha
Helix 26
AC8
B
217 220Right-handed 310
Helix 27
AC9
B
232 253Right-handed alpha
Helix 28
AD1
B
263 279Right-handed alpha
Helix 29
AD2
B
283 287Right-handed 310
Helix 30
AD3
B
289 301Right-handed alpha
Helix 31
AD4
B
323 326Right-handed 310
Helix 32
AD5
B
329 339Right-handed alpha
Helix 33
AD6
B
346 352Right-handed alpha
Helix 34
AD7
B
367 371Right-handed 310
Helix 35
AD8
B
373 394Right-handed alpha
Helix 36
AD9
B
395 403Right-handed 310
Helix 37
AE1
B
404 422Right-handed alpha
Helix 38
AE2
B
430 444Right-handed alpha
Helix 39
AE3
B
445 448Right-handed 310
Helix 40
AE4
B
450 469Right-handed alpha
Helix 41
AE5
B
469 480Right-handed alpha
Helix 42
AE6
B
483 504Right-handed alpha
Helix 43
AE7
C
4 7Right-handed 310
Helix 44
AE8
C
8 18Right-handed alpha
Helix 45
AE9
C
101 105Right-handed 310
Helix 46
AF1
C
151 158Right-handed alpha
Helix 47
AF2
C
175 187Right-handed alpha
Helix 48
AF3
C
202 217Right-handed alpha
Helix 49
AF4
C
232 253Right-handed alpha
Helix 50
AF5
C
264 279Right-handed alpha
Helix 51
AF6
C
283 288Right-handed 310
Helix 52
AF7
C
289 301Right-handed alpha
Helix 53
AF8
C
329 339Right-handed alpha
Helix 54
AF9
C
346 352Right-handed alpha
Helix 55
AG1
C
373 380Right-handed alpha
Helix 56
AG2
C
382 399Right-handed alpha
Helix 57
AG3
C
404 421Right-handed alpha
Helix 58
AG4
C
430 444Right-handed alpha
Helix 59
AG5
C
445 449Right-handed 310
Helix 60
AG6
C
450 469Right-handed alpha
Helix 61
AG7
C
469 480Right-handed alpha
Helix 62
AG8
C
483 504Right-handed alpha
Helix 63
AG9
D
153 159Right-handed alpha
Helix 64
AH1
D
177 193Right-handed alpha
Helix 65
AH2
D
205 220Right-handed alpha
Helix 66
AH3
D
242 262Right-handed alpha
Helix 67
AH4
D
274 290Right-handed alpha
Helix 68
AH5
D
301 313Right-handed alpha
Helix 69
AH6
D
329 333Right-handed 310
Helix 70
AH7
D
336 346Right-handed alpha
Helix 71
AH8
D
353 359Right-handed alpha
Helix 72
AH9
D
376 381Right-handed alpha
Helix 73
AI1
D
381 409Right-handed alpha
Helix 74
AI2
D
410 413Right-handed 310
Helix 75
AI3
D
414 432Right-handed alpha
Helix 76
AI4
D
437 442Right-handed alpha
Helix 77
AI5
D
450 464Right-handed alpha
Helix 78
AI6
D
470 475Right-handed alpha
Helix 79
AI7
D
479 496Right-handed alpha
Helix 80
AI8
E
102 106Right-handed 310
Helix 81
AI9
E
153 159Right-handed alpha
Helix 82
AJ1
E
177 192Right-handed alpha
Helix 83
AJ2
E
205 218Right-handed alpha
Helix 84
AJ3
E
242 262Right-handed alpha
Helix 85
AJ4
E
274 289Right-handed alpha
Helix 86
AJ5
E
301 313Right-handed alpha
Helix 87
AJ6
E
330 333Right-handed 310
Helix 88
AJ7
E
336 346Right-handed alpha
Helix 89
AJ8
E
353 358Right-handed alpha
Helix 90
AJ9
E
376 381Right-handed alpha
Helix 91
AK1
E
381 409Right-handed alpha
Helix 92
AK2
E
414 432Right-handed alpha
Helix 93
AK3
E
438 443Right-handed alpha
Helix 94
AK4
E
450 463Right-handed alpha
Helix 95
AK5
E
464 469Right-handed 310
Helix 96
AK6
E
479 496Right-handed alpha
Helix 97
AK7
F
125 129Right-handed 310
Helix 98
AK8
F
153 159Right-handed alpha
Helix 99
AK9
F
177 193Right-handed alpha
Helix 100
AL1
F
205 220Right-handed alpha
Helix 101
AL2
F
227 230Right-handed 310
Helix 102
AL3
F
242 263Right-handed alpha
Helix 103
AL4
F
274 290Right-handed alpha
Helix 104
AL5
F
301 313Right-handed alpha
Helix 105
AL6
F
330 333Right-handed 310
Helix 106
AL7
F
336 346Right-handed alpha
Helix 107
AL8
F
353 359Right-handed alpha
Helix 108
AL9
F
376 381Right-handed alpha
Helix 109
AM1
F
381 408Right-handed alpha
Helix 110
AM2
F
414 432Right-handed alpha
Helix 111
AM3
F
436 440Right-handed 310
Helix 112
AM4
F
450 464Right-handed alpha
Helix 113
AM5
F
479 493Right-handed alpha
Helix 114
AM6
I
31 159Right-handed alpha
Helix 115
AM7
I
163 182Right-handed alpha
Helix 116
AM8
J
88 108Right-handed alpha
Helix 117
AM9
J
110 202Right-handed alpha
Helix 118
AN1
J
204 219Right-handed alpha
Helix 119
AN2
a
37 58Right-handed alpha
Helix 120
AN3
a
68 87Right-handed alpha
Helix 121
AN4
a
90 115Right-handed alpha
Helix 122
AN5
a
133 155Right-handed alpha
Helix 123
AN6
a
171 208Right-handed alpha
Helix 124
AN7
a
213 244Right-handed alpha
Helix 125
AN8
d
73 90Right-handed alpha
Helix 126
AN9
d
91 107Right-handed alpha
Helix 127
AO1
d
108 116Right-handed alpha
Helix 128
AO2
d
121 137Right-handed alpha
Helix 129
AO3
d
139 153Right-handed alpha
Helix 130
AO4
d
154 156Right-handed 310
Helix 131
AO5
d
157 174Right-handed alpha
Helix 132
AO6
d
187 202Right-handed alpha
Helix 133
AO7
d
237 249Right-handed alpha
Helix 134
AO8
e
88 106Right-handed alpha
Helix 135
AO9
e
108 131Right-handed alpha
Helix 136
AP1
g
44 82Right-handed alpha
Helix 137
AP2
g
82 101Right-handed alpha
Helix 138
AP3
g
132 151Right-handed alpha
Helix 139
AP4
g
161 170Right-handed alpha
Helix 140
AP5
g
187 204Right-handed alpha
Helix 141
AP6
g
287 363Right-handed alpha
Helix 142
AP7
V
4 42Right-handed alpha
Helix 143
AP8
V
45 76Right-handed alpha
Helix 144
AP9
U
4 42Right-handed alpha
Helix 145
AQ1
U
45 76Right-handed alpha
Helix 146
AQ2
T
4 42Right-handed alpha
Helix 147
AQ3
T
45 76Right-handed alpha
Helix 148
AQ4
S
4 42Right-handed alpha
Helix 149
AQ5
S
45 76Right-handed alpha
Helix 150
AQ6
R
4 42Right-handed alpha
Helix 151
AQ7
R
45 76Right-handed alpha
Helix 152
AQ8
Q
4 42Right-handed alpha
Helix 153
AQ9
Q
45 76Right-handed alpha
Helix 154
AR1
P
4 42Right-handed alpha
Helix 155
AR2
P
45 76Right-handed alpha
Helix 156
AR3
O
4 42Right-handed alpha
Helix 157
AR4
O
45 76Right-handed alpha
Helix 158
AR5
N
4 42Right-handed alpha
Helix 159
AR6
N
45 76Right-handed alpha
Helix 160
AR7
M
4 42Right-handed alpha
Helix 161
AR8
M
45 76Right-handed alpha
Helix 162
AR9
Z
4 42Right-handed alpha
Helix 163
AS1
Z
45 76Right-handed alpha
Helix 164
AS2
Y
4 42Right-handed alpha
Helix 165
AS3
Y
45 76Right-handed alpha
Helix 166
AS4
X
4 42Right-handed alpha
Helix 167
AS5
X
45 76Right-handed alpha
Helix 168
AS6
W
4 42Right-handed alpha
Helix 169
AS7
W
45 76Right-handed alpha
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There are 36 sheets in PDB entry 6VM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 31first strand
Strand 2
A
88 95anti-parallel
Strand 3
A
52 55anti-parallel
Strand 4
A
61 66anti-parallel
Strand 5
A
73 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 35first strand
Strand 2
A
40 41anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 100first strand
Strand 2
A
126 129anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 109first strand
Strand 2
A
224 228parallel
Strand 3
A
192 201parallel
Strand 4
A
256 262parallel
Strand 5
A
313 321parallel
Strand 6
A
303 304anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 109first strand
Strand 2
A
224 228parallel
Strand 3
A
192 201parallel
Strand 4
A
256 262parallel
Strand 5
A
313 321parallel
Strand 6
A
166 170parallel
Strand 7
A
341 344parallel
Strand 8
A
364 365anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 147first strand
Strand 2
A
160 161anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 32first strand
Strand 2
B
42 44anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 40first strand
Strand 2
B
73 76anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
53 55anti-parallel
Strand 5
B
90 91anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 98first strand
Strand 2
B
128 129anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 109first strand
Strand 2
B
222 228parallel
Strand 3
B
193 201parallel
Strand 4
B
257 260parallel
Strand 5
B
314 316parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
146 147first strand
Strand 2
B
160 161anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
319 321first strand
Strand 2
B
166 170parallel
Strand 3
B
341 344parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 55first strand
Strand 2
C
88 91anti-parallel
Strand 3
C
27 35anti-parallel
Strand 4
C
39 43anti-parallel
Strand 5
C
72 76anti-parallel
Strand 6
C
62 64anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 55first strand
Strand 2
C
88 91anti-parallel
Strand 3
C
27 35anti-parallel
Strand 4
d
231 234anti-parallel
Strand 5
d
222 225anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 100first strand
Strand 2
C
126 129anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
108 109first strand
Strand 2
C
224 228parallel
Strand 3
C
193 201parallel
Strand 4
C
257 260parallel
Strand 5
C
314 316parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
320 321first strand
Strand 2
C
167 170parallel
Strand 3
C
342 344parallel
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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
19 27first strand
Strand 2
D
30 34anti-parallel
Strand 3
D
73 78anti-parallel
Strand 4
D
60 67anti-parallel
Strand 5
D
47 50anti-parallel
Strand 6
D
90 93anti-parallel
Strand 7
D
19 27anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
99 102first strand
Strand 2
D
128 131anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
148 149first strand
Strand 2
D
162 163anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
167 168first strand
Strand 2
D
323 324parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
233 238first strand
Strand 2
D
198 204parallel
Strand 3
D
271 273parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
348 349first strand
Strand 2
D
371 372anti-parallel
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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
20 23first strand
Strand 2
E
30 34anti-parallel
Strand 3
E
73 78anti-parallel
Strand 4
E
60 70anti-parallel
Strand 5
E
46 50anti-parallel
Strand 6
E
91 93anti-parallel
Strand 7
E
20 23anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
99 100first strand
Strand 2
E
130 131anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
148 149first strand
Strand 2
E
162 163anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
234 237first strand
Strand 2
E
197 202parallel
Strand 3
E
269 273parallel
Strand 4
E
322 328parallel
Strand 5
E
167 172parallel
Strand 6
E
348 351parallel
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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
20 27first strand
Strand 2
F
30 34anti-parallel
Strand 3
F
73 78anti-parallel
Strand 4
F
62 70anti-parallel
Strand 5
F
46 49anti-parallel
Strand 6
F
90 92anti-parallel
Strand 7
F
20 27anti-parallel
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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
110 111first strand
Strand 2
F
232 238parallel
Strand 3
F
196 204parallel
Strand 4
F
267 273parallel
Strand 5
F
320 329parallel
Strand 6
F
167 173parallel
Strand 7
F
348 351parallel
Strand 8
F
371 372anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
148 149first strand
Strand 2
F
162 163anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
28 30first strand
Strand 2
a
34 36anti-parallel
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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
e
4 8first strand
Strand 2
e
73 78parallel
Strand 3
e
65 70anti-parallel
Strand 4
e
40 52anti-parallel
Strand 5
e
57 58anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
e
31 33first strand
Strand 2
e
22 26anti-parallel
Strand 3
e
40 52anti-parallel
Strand 4
g
283 284parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
e
60 62first strand
Strand 2
e
81 83anti-parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
g
179 180first strand
Strand 2
g
155 160parallel
Strand 3
g
118 123parallel
Strand 4
g
211 215parallel
Strand 5
g
225 228anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
g
251 255first strand
Strand 2
g
268 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il