Analysis of interatomic Contacts of Structural Units in PDB entry:
6VM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VM5 entry

There is 1 chain in PDB entry 6VM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 15ASN 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6VM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 36Right-handed alpha
Helix 2
AA2
A
75 92Right-handed alpha
Helix 3
AA3
A
108 110Right-handed 310
Helix 4
AA4
A
111 122Right-handed alpha
Helix 5
AA5
A
135 149Right-handed alpha
Helix 6
AA6
A
152 162Right-handed alpha
Helix 7
AA7
A
172 185Right-handed alpha
Helix 8
AA8
A
191 207Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
216 228Right-handed alpha
Helix 11
AB2
A
231 236Right-handed alpha
Helix 12
AB3
A
264 268Right-handed 310
Helix 13
AB4
A
269 290Right-handed alpha
Helix 14
AB5
A
303 314Right-handed alpha
Helix 15
AB6
A
395 413Right-handed alpha
Helix 16
AB7
A
429 440Right-handed alpha
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There are 3 sheets in PDB entry 6VM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
97 104parallel
Strand 3
A
62 69parallel
Strand 4
A
50 56anti-parallel
Strand 5
A
40 47anti-parallel
Strand 6
A
214 215anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
295 299parallel
Strand 3
A
321 326parallel
Strand 4
A
329 332anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 388first strand
Strand 2
A
357 363parallel
Strand 3
A
421 427parallel
Strand 4
A
446 452parallel
Strand 5
A
455 462anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il