Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VMB entry

There are 26 chains in PDB entry 6VMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	GLN 506
B	MET 1	LEU 503
C	ARG 5	GLN 504
D	LYS 17	SER 494
E	GLU 16	LEU 496
F	LYS 17	LEU 496
I	ASN 30	ILE 182
J	ASP 85	PRO 220
a	VAL 22	GLU 244
d	ASP 72	MET 250
e	MET 1	THR 131
g	CYS 41	CYS 363
Z	PRO 3	VAL 81
Y	PRO 3	VAL 81
X	PRO 3	VAL 81
W	PRO 3	VAL 81
V	PRO 3	VAL 81
U	PRO 3	VAL 81
T	PRO 3	VAL 81
S	PRO 3	VAL 81
P	PRO 3	VAL 81
O	PRO 3	VAL 81
N	PRO 3	VAL 81
M	PRO 3	VAL 81
Q	PRO 3	VAL 81
R	PRO 3	VAL 81

There are162 helices in PDB entry 6VMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	25	Right-handed alpha
Helix 2	AA2	A	151	158	Right-handed alpha
Helix 3	AA3	A	175	187	Right-handed alpha
Helix 4	AA4	A	202	217	Right-handed alpha
Helix 5	AA5	A	232	253	Right-handed alpha
Helix 6	AA6	A	263	278	Right-handed alpha
Helix 7	AA7	A	283	287	Right-handed 310
Helix 8	AA8	A	288	289	Right-handed 310
Helix 9	AA9	A	290	300	Right-handed alpha
Helix 10	AB1	A	306	310	Right-handed 310
Helix 11	AB2	A	329	339	Right-handed alpha
Helix 12	AB3	A	346	353	Right-handed alpha
Helix 13	AB4	A	367	372	Right-handed 310
Helix 14	AB5	A	373	381	Right-handed alpha
Helix 15	AB6	A	382	397	Right-handed alpha
Helix 16	AB7	A	404	420	Right-handed alpha
Helix 17	AB8	A	430	443	Right-handed alpha
Helix 18	AB9	A	443	448	Right-handed alpha
Helix 19	AC1	A	453	468	Right-handed alpha
Helix 20	AC2	A	469	478	Right-handed alpha
Helix 21	AC3	A	483	505	Right-handed alpha
Helix 22	AC4	B	9	18	Right-handed alpha
Helix 23	AC5	B	101	105	Right-handed 310
Helix 24	AC6	B	151	158	Right-handed alpha
Helix 25	AC7	B	177	187	Right-handed alpha
Helix 26	AC8	B	202	216	Right-handed alpha
Helix 27	AC9	B	217	222	Right-handed 310
Helix 28	AD1	B	234	253	Right-handed alpha
Helix 29	AD2	B	263	278	Right-handed alpha
Helix 30	AD3	B	283	287	Right-handed 310
Helix 31	AD4	B	290	300	Right-handed alpha
Helix 32	AD5	B	329	339	Right-handed alpha
Helix 33	AD6	B	346	353	Right-handed alpha
Helix 34	AD7	B	367	371	Right-handed 310
Helix 35	AD8	B	373	397	Right-handed alpha
Helix 36	AD9	B	409	419	Right-handed alpha
Helix 37	AE1	B	430	444	Right-handed alpha
Helix 38	AE2	B	453	469	Right-handed alpha
Helix 39	AE3	B	469	479	Right-handed alpha
Helix 40	AE4	B	483	502	Right-handed alpha
Helix 41	AE5	C	6	20	Right-handed alpha
Helix 42	AE6	C	101	105	Right-handed 310
Helix 43	AE7	C	151	157	Right-handed alpha
Helix 44	AE8	C	175	187	Right-handed alpha
Helix 45	AE9	C	202	217	Right-handed alpha
Helix 46	AF1	C	218	220	Right-handed 310
Helix 47	AF2	C	232	253	Right-handed alpha
Helix 48	AF3	C	263	278	Right-handed alpha
Helix 49	AF4	C	283	287	Right-handed 310
Helix 50	AF5	C	290	300	Right-handed alpha
Helix 51	AF6	C	329	339	Right-handed alpha
Helix 52	AF7	C	346	352	Right-handed alpha
Helix 53	AF8	C	373	394	Right-handed alpha
Helix 54	AF9	C	395	399	Right-handed 310
Helix 55	AG1	C	404	422	Right-handed alpha
Helix 56	AG2	C	430	444	Right-handed alpha
Helix 57	AG3	C	452	469	Right-handed alpha
Helix 58	AG4	C	469	479	Right-handed alpha
Helix 59	AG5	C	483	504	Right-handed alpha
Helix 60	AG6	D	153	159	Right-handed alpha
Helix 61	AG7	D	177	189	Right-handed alpha
Helix 62	AG8	D	205	220	Right-handed alpha
Helix 63	AG9	D	243	263	Right-handed alpha
Helix 64	AH1	D	274	290	Right-handed alpha
Helix 65	AH2	D	302	312	Right-handed alpha
Helix 66	AH3	D	336	346	Right-handed alpha
Helix 67	AH4	D	353	358	Right-handed alpha
Helix 68	AH5	D	376	381	Right-handed alpha
Helix 69	AH6	D	381	408	Right-handed alpha
Helix 70	AH7	D	414	431	Right-handed alpha
Helix 71	AH8	D	436	442	Right-handed 310
Helix 72	AH9	D	450	463	Right-handed alpha
Helix 73	AI1	D	479	492	Right-handed alpha
Helix 74	AI2	E	153	159	Right-handed alpha
Helix 75	AI3	E	177	192	Right-handed alpha
Helix 76	AI4	E	205	219	Right-handed alpha
Helix 77	AI5	E	242	265	Right-handed alpha
Helix 78	AI6	E	275	289	Right-handed alpha
Helix 79	AI7	E	301	311	Right-handed alpha
Helix 80	AI8	E	329	333	Right-handed 310
Helix 81	AI9	E	336	343	Right-handed alpha
Helix 82	AJ1	E	353	360	Right-handed alpha
Helix 83	AJ2	E	376	381	Right-handed alpha
Helix 84	AJ3	E	381	409	Right-handed alpha
Helix 85	AJ4	E	414	432	Right-handed alpha
Helix 86	AJ5	E	451	463	Right-handed alpha
Helix 87	AJ6	E	470	474	Right-handed 310
Helix 88	AJ7	E	479	496	Right-handed alpha
Helix 89	AJ8	F	153	159	Right-handed alpha
Helix 90	AJ9	F	179	193	Right-handed alpha
Helix 91	AK1	F	205	219	Right-handed alpha
Helix 92	AK2	F	226	230	Right-handed 310
Helix 93	AK3	F	242	263	Right-handed alpha
Helix 94	AK4	F	274	287	Right-handed alpha
Helix 95	AK5	F	301	312	Right-handed alpha
Helix 96	AK6	F	329	333	Right-handed 310
Helix 97	AK7	F	336	346	Right-handed alpha
Helix 98	AK8	F	353	359	Right-handed alpha
Helix 99	AK9	F	376	381	Right-handed alpha
Helix 100	AL1	F	382	408	Right-handed alpha
Helix 101	AL2	F	414	431	Right-handed alpha
Helix 102	AL3	F	438	443	Right-handed alpha
Helix 103	AL4	F	450	463	Right-handed alpha
Helix 104	AL5	F	471	475	Right-handed 310
Helix 105	AL6	F	479	496	Right-handed alpha
Helix 106	AL7	I	31	159	Right-handed alpha
Helix 107	AL8	I	162	182	Right-handed alpha
Helix 108	AL9	J	88	108	Right-handed alpha
Helix 109	AM1	J	108	203	Right-handed alpha
Helix 110	AM2	J	203	219	Right-handed alpha
Helix 111	AM3	a	36	58	Right-handed alpha
Helix 112	AM4	a	66	87	Right-handed alpha
Helix 113	AM5	a	94	115	Right-handed alpha
Helix 114	AM6	a	129	132	Right-handed 310
Helix 115	AM7	a	133	156	Right-handed alpha
Helix 116	AM8	a	171	208	Right-handed alpha
Helix 117	AM9	a	213	244	Right-handed alpha
Helix 118	AN1	d	73	89	Right-handed alpha
Helix 119	AN2	d	91	107	Right-handed alpha
Helix 120	AN3	d	109	117	Right-handed alpha
Helix 121	AN4	d	121	137	Right-handed alpha
Helix 122	AN5	d	139	152	Right-handed alpha
Helix 123	AN6	d	154	156	Right-handed 310
Helix 124	AN7	d	157	174	Right-handed alpha
Helix 125	AN8	d	187	203	Right-handed alpha
Helix 126	AN9	d	237	249	Right-handed alpha
Helix 127	AO1	e	88	103	Right-handed alpha
Helix 128	AO2	e	111	126	Right-handed alpha
Helix 129	AO3	e	126	131	Right-handed alpha
Helix 130	AO4	g	42	100	Right-handed alpha
Helix 131	AO5	g	132	151	Right-handed alpha
Helix 132	AO6	g	163	171	Right-handed alpha
Helix 133	AO7	g	187	204	Right-handed alpha
Helix 134	AO8	g	287	361	Right-handed alpha
Helix 135	AO9	Z	4	42	Right-handed alpha
Helix 136	AP1	Z	45	76	Right-handed alpha
Helix 137	AP2	Y	4	42	Right-handed alpha
Helix 138	AP3	Y	45	76	Right-handed alpha
Helix 139	AP4	X	4	42	Right-handed alpha
Helix 140	AP5	X	45	76	Right-handed alpha
Helix 141	AP6	W	4	42	Right-handed alpha
Helix 142	AP7	W	45	76	Right-handed alpha
Helix 143	AP8	V	4	42	Right-handed alpha
Helix 144	AP9	V	45	76	Right-handed alpha
Helix 145	AQ1	U	4	42	Right-handed alpha
Helix 146	AQ2	U	45	76	Right-handed alpha
Helix 147	AQ3	T	4	42	Right-handed alpha
Helix 148	AQ4	T	45	76	Right-handed alpha
Helix 149	AQ5	S	4	42	Right-handed alpha
Helix 150	AQ6	S	45	76	Right-handed alpha
Helix 151	AQ7	P	4	42	Right-handed alpha
Helix 152	AQ8	P	45	76	Right-handed alpha
Helix 153	AQ9	O	4	42	Right-handed alpha
Helix 154	AR1	O	45	76	Right-handed alpha
Helix 155	AR2	N	4	42	Right-handed alpha
Helix 156	AR3	N	45	76	Right-handed alpha
Helix 157	AR4	M	4	42	Right-handed alpha
Helix 158	AR5	M	45	76	Right-handed alpha
Helix 159	AR6	Q	4	42	Right-handed alpha
Helix 160	AR7	Q	45	76	Right-handed alpha
Helix 161	AR8	R	4	42	Right-handed alpha
Helix 162	AR9	R	45	76	Right-handed alpha

There are 27 sheets in PDB entry 6VMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	36	first strand
Strand 2	A	39	44	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	61	67	anti-parallel
Strand 5	A	52	55	anti-parallel
Strand 6	A	90	95	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	128	129	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	222	227	parallel
Strand 3	A	193	199	parallel
Strand 4	A	257	262	parallel
Strand 5	A	314	317	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	341	344	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	41	43	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	61	67	anti-parallel
Strand 5	D	20	27	anti-parallel
Strand 6	B	52	55	first strand
Strand 7	B	90	95	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	41	43	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	61	67	anti-parallel
Strand 5	D	90	93	first strand
Strand 6	D	46	49	anti-parallel
Strand 7	D	63	70	anti-parallel
Strand 8	D	73	78	anti-parallel
Strand 9	D	30	34	anti-parallel
Strand 10	D	20	27	anti-parallel
Strand 11	B	52	55	first strand
Strand 12	B	90	95	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	224	225	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	160	161	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	167	170	parallel
Strand 3	B	342	344	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	198	first strand
Strand 2	B	257	262	parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	208	213	first strand
Strand 2	d	177	182	parallel
Strand 3	d	221	225	anti-parallel
Strand 4	d	231	234	anti-parallel
Strand 5	C	27	35	anti-parallel
Strand 6	C	88	91	anti-parallel
Strand 7	C	53	55	anti-parallel
Strand 8	C	62	67	anti-parallel
Strand 9	C	72	76	anti-parallel
Strand 10	C	39	43	anti-parallel
Strand 11	C	27	35	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	127	129	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	341	343	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	228	first strand
Strand 2	C	193	201	parallel
Strand 3	C	256	261	parallel
Strand 4	C	313	316	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	129	131	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	234	237	parallel
Strand 3	D	199	202	parallel
Strand 4	D	271	273	parallel
Strand 5	D	324	328	parallel
Strand 6	D	170	172	parallel
Strand 7	D	350	352	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	162	163	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	27	first strand
Strand 2	E	30	34	anti-parallel
Strand 3	E	73	78	anti-parallel
Strand 4	E	61	68	anti-parallel
Strand 5	E	46	49	anti-parallel
Strand 6	E	91	93	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	234	235	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	199	first strand
Strand 2	E	268	274	parallel
Strand 3	E	321	326	parallel
Strand 4	E	167	170	parallel
Strand 5	E	348	350	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	27	first strand
Strand 2	F	30	34	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	62	68	anti-parallel
Strand 5	F	46	49	anti-parallel
Strand 6	F	90	93	anti-parallel
Strand 7	F	21	27	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	129	131	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	232	237	parallel
Strand 3	F	197	202	parallel
Strand 4	F	269	273	parallel
Strand 5	F	323	326	parallel
Strand 6	F	167	171	parallel
Strand 7	F	348	351	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	6	8	first strand
Strand 2	e	75	82	parallel
Strand 3	e	57	69	anti-parallel
Strand 4	e	48	52	anti-parallel
Strand 5	e	21	22	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	6	8	first strand
Strand 2	e	75	82	parallel
Strand 3	e	57	69	anti-parallel
Strand 4	e	40	42	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	176	179	first strand
Strand 2	g	157	159	parallel
Strand 3	g	121	122	parallel
Strand 4	g	212	215	parallel
Strand 5	g	225	226	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	251	257	first strand
Strand 2	g	266	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMB