Analysis of interatomic Contacts of Structural Units in PDB entry:
6VME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VME entry

There are 21 chains in PDB entry 6VME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 313ASP 388
C
 SER 99LYS 165
D
 ASN 205HIS 223
E
 ASN 16THR 117
F
 ASN 312ASP 388
G
 ILE 314ASP 388
H
 ASN 312SER 387
I
 ASP 313SER 387
J
 ASN 312SER 387
K
 SER 102GLY 166
L
 SER 102GLY 166
M
 ALA 101LYS 165
N
 SER 99LYS 165
O
 LEU 103LEU 164
P
 ALA 206ARG 225
Q
 ALA 206HIS 223
R
 SER 204PRO 224
A
 SER 204HIS 223
T
 ASN 205LEU 222
U
 LYS 17ILE 118
V
 GLY 15PRO 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6VME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
313 316Right-handed 310
Helix 2
AA2
B
322 351Right-handed alpha
Helix 3
AA3
B
355 384Right-handed alpha
Helix 4
AA4
C
102 130Right-handed alpha
Helix 5
AA5
C
134 163Right-handed alpha
Helix 6
AA6
D
207 216Right-handed 310
Helix 7
AA7
E
29 58Right-handed alpha
Helix 8
AA8
E
62 85Right-handed alpha
Helix 9
AA9
E
91 99Right-handed alpha
Helix 10
AB1
E
103 113Right-handed alpha
Helix 11
AB2
F
313 316Right-handed 310
Helix 12
AB3
F
322 351Right-handed alpha
Helix 13
AB4
F
355 385Right-handed alpha
Helix 14
AB5
G
322 351Right-handed alpha
Helix 15
AB6
G
355 384Right-handed alpha
Helix 16
AB7
H
313 316Right-handed 310
Helix 17
AB8
H
322 351Right-handed alpha
Helix 18
AB9
H
355 384Right-handed alpha
Helix 19
AC1
I
322 351Right-handed alpha
Helix 20
AC2
I
355 385Right-handed alpha
Helix 21
AC3
J
312 317Right-handed 310
Helix 22
AC4
J
322 351Right-handed alpha
Helix 23
AC5
J
355 384Right-handed alpha
Helix 24
AC6
K
103 130Right-handed alpha
Helix 25
AC7
K
134 163Right-handed alpha
Helix 26
AC8
L
103 130Right-handed alpha
Helix 27
AC9
L
134 165Right-handed alpha
Helix 28
AD1
M
102 130Right-handed alpha
Helix 29
AD2
M
134 165Right-handed alpha
Helix 30
AD3
N
102 130Right-handed alpha
Helix 31
AD4
N
134 165Right-handed alpha
Helix 32
AD5
O
104 130Right-handed alpha
Helix 33
AD6
O
134 162Right-handed alpha
Helix 34
AD7
P
207 216Right-handed 310
Helix 35
AD8
Q
211 216Right-handed 310
Helix 36
AD9
R
207 216Right-handed 310
Helix 37
AE1
A
207 216Right-handed 310
Helix 38
AE2
T
207 216Right-handed 310
Helix 39
AE3
U
29 58Right-handed alpha
Helix 40
AE4
U
62 85Right-handed alpha
Helix 41
AE5
U
91 99Right-handed alpha
Helix 42
AE6
U
103 113Right-handed alpha
Helix 43
AE7
V
17 22Right-handed 310
Helix 44
AE8
V
29 58Right-handed alpha
Helix 45
AE9
V
62 85Right-handed alpha
Helix 46
AF1
V
91 99Right-handed alpha
Helix 47
AF2
V
103 113Right-handed alpha
Helix 48
AF3
W
17 22Right-handed 310
Helix 49
AF4
W
29 58Right-handed alpha
Helix 50
AF5
W
62 85Right-handed alpha
Helix 51
AF6
W
91 99Right-handed alpha
Helix 52
AF7
W
103 113Right-handed alpha
Helix 53
AF8
X
18 22Right-handed 310
Helix 54
AF9
X
29 58Right-handed alpha
Helix 55
AG1
X
62 85Right-handed alpha
Helix 56
AG2
X
91 99Right-handed alpha
Helix 57
AG3
X
103 113Right-handed alpha
Helix 58
AG4
Y
29 58Right-handed alpha
Helix 59
AG5
Y
62 85Right-handed alpha
Helix 60
AG6
Y
91 99Right-handed alpha
Helix 61
AG7
Y
103 113Right-handed alpha
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There are 6 sheets in PDB entry 6VME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 320first strand
Strand 2
D
220 222anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
318 320first strand
Strand 2
P
220 222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
318 320first strand
Strand 2
Q
220 222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
318 320first strand
Strand 2
R
220 222anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
318 320first strand
Strand 2
A
220 222anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
319 320first strand
Strand 2
T
220 221anti-parallel
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