Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VMG entry

There are 26 chains in PDB entry 6VMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	GLY 23	GLU 244
I	SER 35	ILE 182
d	SER 73	GLU 249
J	LEU 90	PRO 220
e	LEU 3	THR 131
g	ASN 43	CYS 363
Z	PRO 3	VAL 81
A	SER 10	GLN 504
F	LYS 18	LEU 496
C	THR 3	LEU 503
E	LYS 17	SER 494
B	MET 1	GLN 504
D	LYS 18	LEU 496
Q	PRO 3	VAL 81
P	PRO 3	VAL 81
O	PRO 3	VAL 81
N	PRO 3	VAL 81
M	PRO 3	VAL 81
R	PRO 3	VAL 81
Y	PRO 3	VAL 81
X	PRO 3	VAL 81
W	PRO 3	VAL 81
S	PRO 3	VAL 81
T	PRO 3	VAL 81
U	PRO 3	VAL 81
V	PRO 3	VAL 81

There are171 helices in PDB entry 6VMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	37	57	Right-handed alpha
Helix 2	AA2	a	68	87	Right-handed alpha
Helix 3	AA3	a	90	115	Right-handed alpha
Helix 4	AA4	a	133	155	Right-handed alpha
Helix 5	AA5	a	168	170	Right-handed 310
Helix 6	AA6	a	171	208	Right-handed alpha
Helix 7	AA7	a	213	242	Right-handed alpha
Helix 8	AA8	I	36	159	Right-handed alpha
Helix 9	AA9	I	160	182	Right-handed alpha
Helix 10	AB1	d	74	90	Right-handed alpha
Helix 11	AB2	d	91	107	Right-handed alpha
Helix 12	AB3	d	108	117	Right-handed alpha
Helix 13	AB4	d	121	136	Right-handed alpha
Helix 14	AB5	d	139	152	Right-handed alpha
Helix 15	AB6	d	158	174	Right-handed alpha
Helix 16	AB7	d	187	202	Right-handed alpha
Helix 17	AB8	d	237	249	Right-handed alpha
Helix 18	AB9	J	91	108	Right-handed alpha
Helix 19	AC1	J	108	202	Right-handed alpha
Helix 20	AC2	J	203	219	Right-handed alpha
Helix 21	AC3	e	88	106	Right-handed alpha
Helix 22	AC4	e	108	131	Right-handed alpha
Helix 23	AC5	g	44	81	Right-handed alpha
Helix 24	AC6	g	82	99	Right-handed alpha
Helix 25	AC7	g	132	151	Right-handed alpha
Helix 26	AC8	g	161	171	Right-handed alpha
Helix 27	AC9	g	187	204	Right-handed alpha
Helix 28	AD1	g	288	363	Right-handed alpha
Helix 29	AD2	Z	4	42	Right-handed alpha
Helix 30	AD3	Z	45	76	Right-handed alpha
Helix 31	AD4	A	12	24	Right-handed alpha
Helix 32	AD5	A	57	59	Right-handed 310
Helix 33	AD6	A	101	105	Right-handed 310
Helix 34	AD7	A	151	158	Right-handed alpha
Helix 35	AD8	A	175	187	Right-handed alpha
Helix 36	AD9	A	202	216	Right-handed alpha
Helix 37	AE1	A	217	221	Right-handed alpha
Helix 38	AE2	A	232	252	Right-handed alpha
Helix 39	AE3	A	263	278	Right-handed alpha
Helix 40	AE4	A	283	288	Right-handed 310
Helix 41	AE5	A	289	301	Right-handed alpha
Helix 42	AE6	A	329	339	Right-handed alpha
Helix 43	AE7	A	346	353	Right-handed alpha
Helix 44	AE8	A	367	371	Right-handed 310
Helix 45	AE9	A	373	393	Right-handed alpha
Helix 46	AF1	A	394	403	Right-handed 310
Helix 47	AF2	A	404	420	Right-handed alpha
Helix 48	AF3	A	430	443	Right-handed alpha
Helix 49	AF4	A	444	449	Right-handed alpha
Helix 50	AF5	A	450	469	Right-handed alpha
Helix 51	AF6	A	469	479	Right-handed alpha
Helix 52	AF7	A	483	504	Right-handed alpha
Helix 53	AF8	F	103	106	Right-handed 310
Helix 54	AF9	F	153	159	Right-handed alpha
Helix 55	AG1	F	177	192	Right-handed alpha
Helix 56	AG2	F	205	220	Right-handed alpha
Helix 57	AG3	F	243	248	Right-handed alpha
Helix 58	AG4	F	248	261	Right-handed alpha
Helix 59	AG5	F	274	290	Right-handed alpha
Helix 60	AG6	F	301	312	Right-handed alpha
Helix 61	AG7	F	329	333	Right-handed 310
Helix 62	AG8	F	336	346	Right-handed alpha
Helix 63	AG9	F	353	359	Right-handed alpha
Helix 64	AH1	F	381	401	Right-handed alpha
Helix 65	AH2	F	401	409	Right-handed alpha
Helix 66	AH3	F	414	432	Right-handed alpha
Helix 67	AH4	F	437	442	Right-handed alpha
Helix 68	AH5	F	450	464	Right-handed alpha
Helix 69	AH6	F	470	475	Right-handed alpha
Helix 70	AH7	F	479	496	Right-handed alpha
Helix 71	AH8	C	8	18	Right-handed alpha
Helix 72	AH9	C	101	105	Right-handed 310
Helix 73	AI1	C	151	158	Right-handed alpha
Helix 74	AI2	C	175	187	Right-handed alpha
Helix 75	AI3	C	202	217	Right-handed alpha
Helix 76	AI4	C	232	237	Right-handed alpha
Helix 77	AI5	C	238	252	Right-handed alpha
Helix 78	AI6	C	263	278	Right-handed alpha
Helix 79	AI7	C	283	288	Right-handed 310
Helix 80	AI8	C	289	300	Right-handed alpha
Helix 81	AI9	C	329	339	Right-handed alpha
Helix 82	AJ1	C	346	352	Right-handed alpha
Helix 83	AJ2	C	373	393	Right-handed alpha
Helix 84	AJ3	C	404	421	Right-handed alpha
Helix 85	AJ4	C	430	444	Right-handed alpha
Helix 86	AJ5	C	445	449	Right-handed 310
Helix 87	AJ6	C	450	451	Right-handed 310
Helix 88	AJ7	C	452	468	Right-handed alpha
Helix 89	AJ8	C	469	478	Right-handed alpha
Helix 90	AJ9	C	485	503	Right-handed alpha
Helix 91	AK1	E	103	106	Right-handed 310
Helix 92	AK2	E	153	158	Right-handed alpha
Helix 93	AK3	E	177	193	Right-handed alpha
Helix 94	AK4	E	205	220	Right-handed alpha
Helix 95	AK5	E	227	230	Right-handed 310
Helix 96	AK6	E	242	248	Right-handed alpha
Helix 97	AK7	E	248	262	Right-handed alpha
Helix 98	AK8	E	274	290	Right-handed alpha
Helix 99	AK9	E	301	313	Right-handed alpha
Helix 100	AL1	E	330	333	Right-handed 310
Helix 101	AL2	E	336	346	Right-handed alpha
Helix 102	AL3	E	354	359	Right-handed alpha
Helix 103	AL4	E	376	381	Right-handed alpha
Helix 104	AL5	E	381	408	Right-handed alpha
Helix 105	AL6	E	409	413	Right-handed 310
Helix 106	AL7	E	414	432	Right-handed alpha
Helix 107	AL8	E	437	441	Right-handed 310
Helix 108	AL9	E	450	463	Right-handed alpha
Helix 109	AM1	E	470	475	Right-handed alpha
Helix 110	AM2	E	479	493	Right-handed alpha
Helix 111	AM3	B	2	9	Right-handed alpha
Helix 112	AM4	B	11	19	Right-handed alpha
Helix 113	AM5	B	151	158	Right-handed alpha
Helix 114	AM6	B	175	188	Right-handed alpha
Helix 115	AM7	B	202	217	Right-handed alpha
Helix 116	AM8	B	217	221	Right-handed alpha
Helix 117	AM9	B	232	252	Right-handed alpha
Helix 118	AN1	B	263	278	Right-handed alpha
Helix 119	AN2	B	283	287	Right-handed 310
Helix 120	AN3	B	289	300	Right-handed alpha
Helix 121	AN4	B	329	339	Right-handed alpha
Helix 122	AN5	B	346	353	Right-handed alpha
Helix 123	AN6	B	368	372	Right-handed 310
Helix 124	AN7	B	373	380	Right-handed alpha
Helix 125	AN8	B	383	396	Right-handed alpha
Helix 126	AN9	B	404	422	Right-handed alpha
Helix 127	AO1	B	430	443	Right-handed alpha
Helix 128	AO2	B	450	469	Right-handed alpha
Helix 129	AO3	B	469	479	Right-handed alpha
Helix 130	AO4	B	483	503	Right-handed alpha
Helix 131	AO5	D	102	106	Right-handed 310
Helix 132	AO6	D	153	160	Right-handed alpha
Helix 133	AO7	D	177	193	Right-handed alpha
Helix 134	AO8	D	205	218	Right-handed alpha
Helix 135	AO9	D	242	262	Right-handed alpha
Helix 136	AP1	D	274	290	Right-handed alpha
Helix 137	AP2	D	301	313	Right-handed alpha
Helix 138	AP3	D	330	333	Right-handed 310
Helix 139	AP4	D	336	346	Right-handed alpha
Helix 140	AP5	D	380	409	Right-handed alpha
Helix 141	AP6	D	410	413	Right-handed 310
Helix 142	AP7	D	414	432	Right-handed alpha
Helix 143	AP8	D	450	463	Right-handed alpha
Helix 144	AP9	D	464	468	Right-handed 310
Helix 145	AQ1	D	479	496	Right-handed alpha
Helix 146	AQ2	Q	4	42	Right-handed alpha
Helix 147	AQ3	Q	45	76	Right-handed alpha
Helix 148	AQ4	P	4	42	Right-handed alpha
Helix 149	AQ5	P	45	76	Right-handed alpha
Helix 150	AQ6	O	4	42	Right-handed alpha
Helix 151	AQ7	O	45	76	Right-handed alpha
Helix 152	AQ8	N	4	42	Right-handed alpha
Helix 153	AQ9	N	45	76	Right-handed alpha
Helix 154	AR1	M	4	42	Right-handed alpha
Helix 155	AR2	M	45	76	Right-handed alpha
Helix 156	AR3	R	4	42	Right-handed alpha
Helix 157	AR4	R	45	76	Right-handed alpha
Helix 158	AR5	Y	4	42	Right-handed alpha
Helix 159	AR6	Y	45	76	Right-handed alpha
Helix 160	AR7	X	4	42	Right-handed alpha
Helix 161	AR8	X	45	76	Right-handed alpha
Helix 162	AR9	W	4	42	Right-handed alpha
Helix 163	AS1	W	45	76	Right-handed alpha
Helix 164	AS2	S	4	42	Right-handed alpha
Helix 165	AS3	S	45	76	Right-handed alpha
Helix 166	AS4	T	4	42	Right-handed alpha
Helix 167	AS5	T	45	76	Right-handed alpha
Helix 168	AS6	U	4	42	Right-handed alpha
Helix 169	AS7	U	45	76	Right-handed alpha
Helix 170	AS8	V	4	42	Right-handed alpha
Helix 171	AS9	V	45	76	Right-handed alpha

There are 30 sheets in PDB entry 6VMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	29	30	first strand
Strand 2	a	34	35	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	178	179	first strand
Strand 2	d	209	210	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	221	225	first strand
Strand 2	d	231	235	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	4	8	first strand
Strand 2	e	73	78	parallel
Strand 3	e	57	70	anti-parallel
Strand 4	e	40	52	anti-parallel
Strand 5	e	81	83	first strand

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	31	32	first strand
Strand 2	e	22	24	anti-parallel
Strand 3	e	40	52	anti-parallel
Strand 4	e	57	70	anti-parallel
Strand 5	g	283	284	first strand

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	176	179	first strand
Strand 2	g	156	159	parallel
Strand 3	g	119	122	parallel
Strand 4	g	211	214	parallel
Strand 5	g	226	229	anti-parallel
Strand 6	g	240	241	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	254	258	first strand
Strand 2	g	265	269	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	39	42	anti-parallel
Strand 3	A	73	76	anti-parallel
Strand 4	A	61	66	anti-parallel
Strand 5	A	53	55	anti-parallel
Strand 6	A	90	91	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	127	128	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	108	110	anti-parallel
Strand 3	A	222	227	parallel
Strand 4	A	193	199	parallel
Strand 5	A	257	261	parallel
Strand 6	A	314	315	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	166	170	parallel
Strand 3	A	341	344	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	27	first strand
Strand 2	F	30	34	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	58	70	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	90	93	anti-parallel
Strand 7	F	19	27	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	129	130	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	238	first strand
Strand 2	F	197	204	parallel
Strand 3	F	267	273	parallel
Strand 4	F	320	326	parallel
Strand 5	F	167	171	parallel
Strand 6	F	348	352	parallel
Strand 7	F	365	370	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	36	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	72	76	anti-parallel
Strand 4	C	61	66	anti-parallel
Strand 5	C	53	55	anti-parallel
Strand 6	C	88	91	anti-parallel
Strand 7	C	28	36	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	126	129	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	115	first strand
Strand 2	C	108	110	anti-parallel
Strand 3	C	222	228	parallel
Strand 4	C	192	201	parallel
Strand 5	C	256	262	parallel
Strand 6	C	313	316	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	321	first strand
Strand 2	C	167	170	parallel
Strand 3	C	341	344	parallel
Strand 4	C	364	365	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	30	34	anti-parallel
Strand 3	E	73	78	anti-parallel
Strand 4	E	62	70	anti-parallel
Strand 5	E	46	49	anti-parallel
Strand 6	E	91	93	anti-parallel
Strand 7	E	20	26	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	129	131	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	232	238	parallel
Strand 3	E	196	204	parallel
Strand 4	E	268	273	parallel
Strand 5	E	321	322	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	E	162	163	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	328	first strand
Strand 2	E	168	172	parallel
Strand 3	E	348	352	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	36	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	71	77	anti-parallel
Strand 4	B	61	66	anti-parallel
Strand 5	B	53	55	anti-parallel
Strand 6	B	88	91	anti-parallel
Strand 7	B	29	36	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	126	127	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	222	227	parallel
Strand 3	B	192	199	parallel
Strand 4	B	256	262	parallel
Strand 5	B	313	319	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	342	344	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	27	first strand
Strand 2	D	30	34	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	58	70	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	90	92	anti-parallel
Strand 7	D	20	27	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	130	131	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	232	237	parallel
Strand 3	D	197	202	parallel
Strand 4	D	268	273	parallel
Strand 5	D	321	328	parallel
Strand 6	D	167	172	parallel
Strand 7	D	348	351	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMG