Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VMK entry

There are 7 chains in PDB entry 6VMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
W
 ILE 16ALA 243
L
 ASP 1GLU 213
M
 GLU 1SER 217
C
 ILE 16ALA 243
A
 ASP 1GLU 213
B
 GLU 1SER 217
F
 ILE 16SER 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are183 helices in PDB entry 6VMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
W
55 60Right-handed 310
Helix 2
AA2
W
164 169Right-handed alpha
Helix 3
AA3
W
234 243Right-handed alpha
Helix 4
AA4
L
79 83Right-handed 310
Helix 5
AA5
L
121 126Right-handed alpha
Helix 6
AA6
L
183 187Right-handed alpha
Helix 7
AA7
M
28 32Right-handed 310
Helix 8
AA8
M
87 91Right-handed 310
Helix 9
AA9
M
158 160Right-handed 310
Helix 10
AB1
M
189 191Right-handed 310
Helix 11
AB2
M
203 206Right-handed 310
Helix 12
AB3
C
55 60Right-handed 310
Helix 13
AB4
C
164 169Right-handed alpha
Helix 14
AB5
C
234 243Right-handed alpha
Helix 15
AB6
A
79 83Right-handed 310
Helix 16
AB7
A
121 126Right-handed alpha
Helix 17
AB8
A
183 187Right-handed alpha
Helix 18
AB9
B
28 32Right-handed 310
Helix 19
AC1
B
74 76Right-handed 310
Helix 20
AC2
B
87 91Right-handed 310
Helix 21
AC3
B
158 160Right-handed 310
Helix 22
AC4
B
189 191Right-handed 310
Helix 23
AC5
B
203 206Right-handed 310
Helix 24
AC6
F
55 60Right-handed 310
Helix 25
AC7
F
164 169Right-handed alpha
Helix 26
AC8
F
234 243Right-handed alpha
Helix 27
AC9
D
79 83Right-handed 310
Helix 28
AD1
D
123 127Right-handed 310
Helix 29
AD2
D
183 187Right-handed alpha
Helix 30
AD3
E
28 32Right-handed 310
Helix 31
AD4
E
62 65Right-handed 310
Helix 32
AD5
E
74 76Right-handed 310
Helix 33
AD6
E
87 91Right-handed 310
Helix 34
AD7
E
158 160Right-handed 310
Helix 35
AD8
E
189 191Right-handed 310
Helix 36
AD9
E
203 206Right-handed 310
Helix 37
AE1
I
55 60Right-handed 310
Helix 38
AE2
I
164 169Right-handed alpha
Helix 39
AE3
I
234 243Right-handed alpha
Helix 40
AE4
G
79 83Right-handed 310
Helix 41
AE5
G
121 126Right-handed alpha
Helix 42
AE6
G
183 188Right-handed alpha
Helix 43
AE7
H
28 32Right-handed 310
Helix 44
AE8
H
74 76Right-handed 310
Helix 45
AE9
H
87 91Right-handed 310
Helix 46
AF1
H
189 191Right-handed 310
Helix 47
AF2
H
203 206Right-handed 310
Helix 48
AF3
N
55 60Right-handed 310
Helix 49
AF4
N
164 169Right-handed alpha
Helix 50
AF5
N
234 242Right-handed alpha
Helix 51
AF6
J
79 83Right-handed 310
Helix 52
AF7
J
121 126Right-handed alpha
Helix 53
AF8
J
183 187Right-handed alpha
Helix 54
AF9
K
28 32Right-handed 310
Helix 55
AG1
K
62 65Right-handed 310
Helix 56
AG2
K
189 191Right-handed 310
Helix 57
AG3
K
203 206Right-handed 310
Helix 58
AG4
Q
55 60Right-handed 310
Helix 59
AG5
Q
164 169Right-handed alpha
Helix 60
AG6
Q
234 242Right-handed alpha
Helix 61
AG7
O
79 83Right-handed 310
Helix 62
AG8
O
121 126Right-handed alpha
Helix 63
AG9
O
183 187Right-handed alpha
Helix 64
AH1
P
28 32Right-handed 310
Helix 65
AH2
P
74 76Right-handed 310
Helix 66
AH3
P
158 160Right-handed 310
Helix 67
AH4
P
189 191Right-handed 310
Helix 68
AH5
P
203 206Right-handed 310
Helix 69
AH6
T
55 60Right-handed 310
Helix 70
AH7
T
164 169Right-handed alpha
Helix 71
AH8
T
234 243Right-handed alpha
Helix 72
AH9
R
79 83Right-handed 310
Helix 73
AI1
R
123 127Right-handed 310
Helix 74
AI2
R
183 187Right-handed alpha
Helix 75
AI3
S
28 32Right-handed 310
Helix 76
AI4
S
87 91Right-handed 310
Helix 77
AI5
S
158 160Right-handed 310
Helix 78
AI6
S
189 191Right-handed 310
Helix 79
AI7
S
203 206Right-handed 310
Helix 80
AI8
X
55 60Right-handed 310
Helix 81
AI9
X
164 169Right-handed alpha
Helix 82
AJ1
X
234 243Right-handed alpha
Helix 83
AJ2
U
79 83Right-handed 310
Helix 84
AJ3
U
121 126Right-handed alpha
Helix 85
AJ4
U
183 187Right-handed alpha
Helix 86
AJ5
V
28 32Right-handed 310
Helix 87
AJ6
V
62 65Right-handed 310
Helix 88
AJ7
V
87 91Right-handed 310
Helix 89
AJ8
V
158 160Right-handed 310
Helix 90
AJ9
V
189 191Right-handed 310
Helix 91
AK1
V
203 206Right-handed 310
Helix 92
AK2
a
55 61Right-handed 310
Helix 93
AK3
a
164 169Right-handed alpha
Helix 94
AK4
a
234 243Right-handed alpha
Helix 95
AK5
Y
79 83Right-handed 310
Helix 96
AK6
Y
121 126Right-handed alpha
Helix 97
AK7
Y
183 187Right-handed alpha
Helix 98
AK8
Z
28 32Right-handed 310
Helix 99
AK9
Z
62 65Right-handed 310
Helix 100
AL1
Z
74 76Right-handed 310
Helix 101
AL2
Z
87 91Right-handed 310
Helix 102
AL3
Z
158 160Right-handed 310
Helix 103
AL4
Z
189 191Right-handed 310
Helix 104
AL5
Z
203 206Right-handed 310
Helix 105
AL6
d
55 60Right-handed 310
Helix 106
AL7
d
164 169Right-handed alpha
Helix 107
AL8
d
234 243Right-handed alpha
Helix 108
AL9
b
79 83Right-handed 310
Helix 109
AM1
b
121 126Right-handed alpha
Helix 110
AM2
b
183 187Right-handed alpha
Helix 111
AM3
c
28 32Right-handed 310
Helix 112
AM4
c
62 65Right-handed 310
Helix 113
AM5
c
87 91Right-handed 310
Helix 114
AM6
c
158 160Right-handed 310
Helix 115
AM7
c
189 191Right-handed 310
Helix 116
AM8
c
203 206Right-handed 310
Helix 117
AM9
g
55 60Right-handed 310
Helix 118
AN1
g
164 169Right-handed alpha
Helix 119
AN2
g
234 242Right-handed alpha
Helix 120
AN3
e
79 83Right-handed 310
Helix 121
AN4
e
121 126Right-handed alpha
Helix 122
AN5
e
183 187Right-handed alpha
Helix 123
AN6
f
28 32Right-handed 310
Helix 124
AN7
f
87 91Right-handed 310
Helix 125
AN8
f
158 160Right-handed 310
Helix 126
AN9
f
189 191Right-handed 310
Helix 127
AO1
f
203 206Right-handed 310
Helix 128
AO2
j
55 60Right-handed 310
Helix 129
AO3
j
164 169Right-handed alpha
Helix 130
AO4
j
234 242Right-handed alpha
Helix 131
AO5
h
79 83Right-handed 310
Helix 132
AO6
h
121 126Right-handed alpha
Helix 133
AO7
h
183 187Right-handed alpha
Helix 134
AO8
i
28 32Right-handed 310
Helix 135
AO9
i
87 91Right-handed 310
Helix 136
AP1
i
158 160Right-handed 310
Helix 137
AP2
i
189 191Right-handed 310
Helix 138
AP3
i
203 206Right-handed 310
Helix 139
AP4
m
55 60Right-handed 310
Helix 140
AP5
m
164 169Right-handed alpha
Helix 141
AP6
m
234 243Right-handed alpha
Helix 142
AP7
k
79 83Right-handed 310
Helix 143
AP8
k
121 126Right-handed alpha
Helix 144
AP9
k
183 187Right-handed alpha
Helix 145
AQ1
l
28 32Right-handed 310
Helix 146
AQ2
l
87 91Right-handed 310
Helix 147
AQ3
l
158 160Right-handed 310
Helix 148
AQ4
l
189 191Right-handed 310
Helix 149
AQ5
l
203 206Right-handed 310
Helix 150
AQ6
p
55 60Right-handed 310
Helix 151
AQ7
p
164 169Right-handed alpha
Helix 152
AQ8
p
234 243Right-handed alpha
Helix 153
AQ9
n
79 83Right-handed 310
Helix 154
AR1
n
121 126Right-handed alpha
Helix 155
AR2
n
183 187Right-handed alpha
Helix 156
AR3
o
28 32Right-handed 310
Helix 157
AR4
o
74 76Right-handed 310
Helix 158
AR5
o
87 91Right-handed 310
Helix 159
AR6
o
158 160Right-handed 310
Helix 160
AR7
o
189 191Right-handed 310
Helix 161
AR8
o
203 206Right-handed 310
Helix 162
AR9
s
55 60Right-handed 310
Helix 163
AS1
s
164 169Right-handed alpha
Helix 164
AS2
s
234 243Right-handed alpha
Helix 165
AS3
q
79 83Right-handed 310
Helix 166
AS4
q
121 126Right-handed alpha
Helix 167
AS5
q
183 187Right-handed alpha
Helix 168
AS6
r
28 32Right-handed 310
Helix 169
AS7
r
87 91Right-handed 310
Helix 170
AS8
r
189 191Right-handed 310
Helix 171
AS9
r
203 206Right-handed 310
Helix 172
AT1
v
55 60Right-handed 310
Helix 173
AT2
v
164 169Right-handed alpha
Helix 174
AT3
v
234 243Right-handed alpha
Helix 175
AT4
t
79 83Right-handed 310
Helix 176
AT5
t
121 126Right-handed alpha
Helix 177
AT6
t
183 187Right-handed alpha
Helix 178
AT7
u
28 32Right-handed 310
Helix 179
AT8
u
62 65Right-handed 310
Helix 180
AT9
u
87 91Right-handed 310
Helix 181
AU1
u
158 160Right-handed 310
Helix 182
AU2
u
189 191Right-handed 310
Helix 183
AU3
u
203 206Right-handed 310
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