Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VMX entry

There are 10 chains in PDB entry 6VMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PRO 276
B	MET 0	MET 99
C	ARG 1	LEU 9
D	MET 0	SER 216
E	ASP 1	ASP 256
F	GLY 1	PRO 269
G	MET 0	MET 99
H	ARG 1	LEU 9
I	MET 0	SER 216
J	THR 2	ASP 256

There are 25 helices in PDB entry 6VMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	55	Right-handed 310
Helix 2	AA2	A	56	85	Right-handed alpha
Helix 3	AA3	A	139	150	Right-handed alpha
Helix 4	AA4	A	152	162	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	D	95	99	Right-handed 310
Helix 8	AA8	D	198	202	Right-handed 310
Helix 9	AA9	E	95	99	Right-handed 310
Helix 10	AB1	E	128	132	Right-handed 310
Helix 11	AB2	E	143	151	Right-handed alpha
Helix 12	AB3	E	210	215	Right-handed alpha
Helix 13	AB4	F	51	55	Right-handed 310
Helix 14	AB5	F	56	85	Right-handed alpha
Helix 15	AB6	F	139	150	Right-handed alpha
Helix 16	AB7	F	151	162	Right-handed alpha
Helix 17	AB8	F	162	175	Right-handed alpha
Helix 18	AB9	F	175	180	Right-handed alpha
Helix 19	AC1	F	253	257	Right-handed 310
Helix 20	AC2	I	95	99	Right-handed 310
Helix 21	AC3	I	198	203	Right-handed alpha
Helix 22	AC4	J	95	99	Right-handed 310
Helix 23	AC5	J	128	132	Right-handed 310
Helix 24	AC6	J	143	151	Right-handed alpha
Helix 25	AC7	J	210	215	Right-handed alpha

There are 34 sheets in PDB entry 6VMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	229	230	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	219	first strand
Strand 2	A	257	262	anti-parallel
Strand 3	A	270	272	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	76	81	anti-parallel
Strand 5	D	65	68	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	120	125	parallel
Strand 3	D	101	108	anti-parallel
Strand 4	D	36	44	anti-parallel
Strand 5	D	51	56	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	120	125	parallel
Strand 3	D	101	108	anti-parallel
Strand 4	D	114	116	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	137	first strand
Strand 2	D	147	152	anti-parallel
Strand 3	D	184	192	anti-parallel
Strand 4	D	168	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	137	first strand
Strand 2	D	147	152	anti-parallel
Strand 3	D	184	192	anti-parallel
Strand 4	D	175	177	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	76	79	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	121	126	parallel
Strand 3	E	101	107	anti-parallel
Strand 4	E	38	44	anti-parallel
Strand 5	E	51	57	anti-parallel
Strand 6	E	64	68	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	121	126	parallel
Strand 3	E	101	107	anti-parallel
Strand 4	E	116	117	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	152	162	anti-parallel
Strand 3	E	200	209	anti-parallel
Strand 4	E	182	184	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	152	162	anti-parallel
Strand 3	E	200	209	anti-parallel
Strand 4	E	189	190	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	178	first strand
Strand 2	E	167	173	anti-parallel
Strand 3	E	219	226	anti-parallel
Strand 4	E	245	252	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	31	37	anti-parallel
Strand 3	F	21	28	anti-parallel
Strand 4	F	3	12	anti-parallel
Strand 5	F	94	103	anti-parallel
Strand 6	F	109	118	anti-parallel
Strand 7	F	121	126	anti-parallel
Strand 8	F	133	135	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	193	first strand
Strand 2	F	199	208	anti-parallel
Strand 3	F	241	247	anti-parallel
Strand 4	F	229	230	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	193	first strand
Strand 2	F	199	208	anti-parallel
Strand 3	F	241	247	anti-parallel
Strand 4	F	234	235	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	216	first strand
Strand 2	F	260	262	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	50	51	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	55	56	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	G	36	41	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	91	94	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	19	24	anti-parallel
Strand 3	I	86	91	anti-parallel
Strand 4	I	76	81	anti-parallel
Strand 5	I	65	67	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	120	125	parallel
Strand 3	I	101	108	anti-parallel
Strand 4	I	36	44	anti-parallel
Strand 5	I	51	56	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	120	125	parallel
Strand 3	I	101	108	anti-parallel
Strand 4	I	114	116	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	168	170	first strand
Strand 2	I	184	192	anti-parallel
Strand 3	I	147	152	anti-parallel
Strand 4	I	134	140	anti-parallel
Strand 5	J	136	141	anti-parallel
Strand 6	J	152	162	anti-parallel
Strand 7	J	200	209	anti-parallel
Strand 8	J	182	184	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	174	177	first strand
Strand 2	I	184	192	anti-parallel
Strand 3	I	147	152	anti-parallel
Strand 4	I	134	140	anti-parallel
Strand 5	J	136	141	anti-parallel
Strand 6	J	152	162	anti-parallel
Strand 7	J	200	209	anti-parallel
Strand 8	J	189	190	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	86	91	anti-parallel
Strand 4	J	76	79	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	121	126	parallel
Strand 3	J	101	107	anti-parallel
Strand 4	J	38	44	anti-parallel
Strand 5	J	51	57	anti-parallel
Strand 6	J	64	68	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	121	126	parallel
Strand 3	J	101	107	anti-parallel
Strand 4	J	116	117	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	178	first strand
Strand 2	J	167	173	anti-parallel
Strand 3	J	219	226	anti-parallel
Strand 4	J	245	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMX