Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VMZ entry

There are 6 chains in PDB entry 6VMZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 10	ASN 329
C	GLY 10	PRO 331
E	GLY 10	PRO 331
B	GLY 1	SER 174
D	GLY 1	SER 174
F	GLY 1	HIS 142

There are 25 helices in PDB entry 6VMZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	73	Right-handed alpha
Helix 2	AA2	A	74	81	Right-handed 310
Helix 3	AA3	A	107	116	Right-handed alpha
Helix 4	AA4	A	128	132	Right-handed 310
Helix 5	AA5	A	193	202	Right-handed alpha
Helix 6	AA6	C	66	73	Right-handed alpha
Helix 7	AA7	C	74	81	Right-handed 310
Helix 8	AA8	C	107	116	Right-handed alpha
Helix 9	AA9	C	128	132	Right-handed 310
Helix 10	AB1	C	193	202	Right-handed alpha
Helix 11	AB2	E	66	73	Right-handed alpha
Helix 12	AB3	E	74	81	Right-handed 310
Helix 13	AB4	E	107	116	Right-handed alpha
Helix 14	AB5	E	128	132	Right-handed 310
Helix 15	AB6	E	193	202	Right-handed alpha
Helix 16	AB7	B	37	59	Right-handed alpha
Helix 17	AB8	B	74	127	Right-handed alpha
Helix 18	AB9	B	145	154	Right-handed alpha
Helix 19	AC1	B	158	171	Right-handed alpha
Helix 20	AC2	D	37	58	Right-handed alpha
Helix 21	AC3	D	74	127	Right-handed alpha
Helix 22	AC4	D	145	154	Right-handed alpha
Helix 23	AC5	D	158	174	Right-handed alpha
Helix 24	AC6	F	37	58	Right-handed alpha
Helix 25	AC7	F	74	127	Right-handed alpha

There are 33 sheets in PDB entry 6VMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	A	12	17	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	34	35	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	322	324	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	301	302	parallel
Strand 3	A	314	315	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	281	286	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	89	91	parallel
Strand 3	A	274	276	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	235	243	parallel
Strand 3	A	182	190	anti-parallel
Strand 4	A	262	269	anti-parallel
Strand 5	A	118	125	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	235	243	parallel
Strand 3	A	182	190	anti-parallel
Strand 4	A	257	260	anti-parallel
Strand 5	A	157	159	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	150	152	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	248	253	anti-parallel
Strand 3	A	208	211	anti-parallel
Strand 4	A	216	219	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	288	290	anti-parallel
Strand 3	A	309	310	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	22	27	anti-parallel
Strand 3	C	12	17	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	34	35	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	322	324	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	301	302	parallel
Strand 3	C	314	315	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	281	286	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	89	91	parallel
Strand 3	C	274	276	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	235	243	parallel
Strand 3	C	182	190	anti-parallel
Strand 4	C	262	269	anti-parallel
Strand 5	C	118	125	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	235	243	parallel
Strand 3	C	182	190	anti-parallel
Strand 4	C	257	260	anti-parallel
Strand 5	C	157	159	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	147	first strand
Strand 2	C	150	152	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	248	253	anti-parallel
Strand 3	C	208	211	anti-parallel
Strand 4	C	216	219	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	288	290	anti-parallel
Strand 3	C	309	310	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	22	27	anti-parallel
Strand 3	E	12	17	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	26	first strand
Strand 2	E	34	35	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	322	324	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	301	302	parallel
Strand 3	E	314	315	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	281	286	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	89	91	parallel
Strand 3	E	274	276	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	105	first strand
Strand 2	E	235	243	parallel
Strand 3	E	182	190	anti-parallel
Strand 4	E	262	269	anti-parallel
Strand 5	E	118	125	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	105	first strand
Strand 2	E	235	243	parallel
Strand 3	E	182	190	anti-parallel
Strand 4	E	257	260	anti-parallel
Strand 5	E	157	159	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	147	first strand
Strand 2	E	150	152	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	175	first strand
Strand 2	E	248	253	anti-parallel
Strand 3	E	208	211	anti-parallel
Strand 4	E	216	219	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	294	first strand
Strand 2	E	288	290	anti-parallel
Strand 3	E	309	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VMZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VMZ