Analysis of interatomic Contacts of Structural Units in PDB entry:
6VN1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VN1 entry

There are 6 chains in PDB entry 6VN1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	ILE 106
H	GLN 1	SER 128
A	THR 115	GLN 736
M	ASP 1	ILE 106
I	GLN 1	SER 128
B	THR 115	PHE 328

There are 42 helices in PDB entry 6VN1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	26	30	Right-handed 310
Helix 2	AA2	H	108	112	Right-handed 310
Helix 3	AA3	A	199	211	Right-handed alpha
Helix 4	AA4	A	231	233	Right-handed 310
Helix 5	AA5	A	312	316	Right-handed 310
Helix 6	AA6	A	363	367	Right-handed 310
Helix 7	AA7	A	408	412	Right-handed 310
Helix 8	AA8	A	416	434	Right-handed alpha
Helix 9	AA9	A	512	554	Right-handed alpha
Helix 10	AB1	A	557	566	Right-handed alpha
Helix 11	AB2	A	674	676	Right-handed 310
Helix 12	AB3	A	702	707	Right-handed alpha
Helix 13	AB4	A	713	722	Right-handed alpha
Helix 14	AB5	A	723	729	Right-handed alpha
Helix 15	AB6	I	26	30	Right-handed 310
Helix 16	AB7	I	108	112	Right-handed 310
Helix 17	AB8	B	199	211	Right-handed alpha
Helix 18	AB9	B	231	233	Right-handed 310
Helix 19	AC1	B	312	316	Right-handed 310
Helix 20	AC2	B	363	367	Right-handed 310
Helix 21	AC3	B	408	412	Right-handed 310
Helix 22	AC4	B	416	434	Right-handed alpha
Helix 23	AC5	B	512	554	Right-handed alpha
Helix 24	AC6	B	557	566	Right-handed alpha
Helix 25	AC7	B	674	676	Right-handed 310
Helix 26	AC8	B	702	707	Right-handed alpha
Helix 27	AC9	B	713	722	Right-handed alpha
Helix 28	AD1	B	723	729	Right-handed alpha
Helix 29	AD2	J	26	30	Right-handed 310
Helix 30	AD3	J	108	112	Right-handed 310
Helix 31	AD4	C	199	211	Right-handed alpha
Helix 32	AD5	C	231	233	Right-handed 310
Helix 33	AD6	C	312	316	Right-handed 310
Helix 34	AD7	C	363	367	Right-handed 310
Helix 35	AD8	C	408	412	Right-handed 310
Helix 36	AD9	C	416	434	Right-handed alpha
Helix 37	AE1	C	512	554	Right-handed alpha
Helix 38	AE2	C	557	566	Right-handed alpha
Helix 39	AE3	C	674	676	Right-handed 310
Helix 40	AE4	C	702	707	Right-handed alpha
Helix 41	AE5	C	713	722	Right-handed alpha
Helix 42	AE6	C	723	729	Right-handed alpha

There are 54 sheets in PDB entry 6VN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	74	75	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	24	first strand
Strand 2	L	70	71	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	33	35	first strand
Strand 2	L	88	90	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	53	54	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	124	126	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	51	first strand
Strand 2	H	32	38	anti-parallel
Strand 3	H	95	100	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	69	72	first strand
Strand 2	H	79	82	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	579	580	anti-parallel
Strand 3	A	130	133	anti-parallel
Strand 4	B	677	679	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	403	first strand
Strand 2	A	388	393	anti-parallel
Strand 3	A	371	383	anti-parallel
Strand 4	A	150	158	anti-parallel
Strand 5	A	454	462	anti-parallel
Strand 6	A	438	440	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	403	first strand
Strand 2	A	388	393	anti-parallel
Strand 3	A	371	383	anti-parallel
Strand 4	A	150	158	anti-parallel
Strand 5	A	454	462	anti-parallel
Strand 6	A	445	448	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	197	first strand
Strand 2	A	163	181	anti-parallel
Strand 3	A	269	271	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	252	254	anti-parallel
Strand 3	A	274	286	anti-parallel
Strand 4	A	163	181	anti-parallel
Strand 5	A	355	360	anti-parallel
Strand 6	A	347	352	anti-parallel
Strand 7	A	325	328	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	237	239	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	221	first strand
Strand 2	A	224	229	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	300	301	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	595	first strand
Strand 2	A	613	618	anti-parallel
Strand 3	A	624	629	anti-parallel
Strand 4	A	635	636	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	609	first strand
Strand 2	A	642	644	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	655	first strand
Strand 2	A	658	663	anti-parallel
Strand 3	A	667	672	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	679	first strand
Strand 2	C	130	133	parallel
Strand 3	C	579	580	anti-parallel
Strand 4	C	573	574	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	20	first strand
Strand 2	M	74	75	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	23	24	first strand
Strand 2	M	70	71	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	33	35	first strand
Strand 2	M	88	90	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	48	49	first strand
Strand 2	M	53	54	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	124	126	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	51	first strand
Strand 2	I	32	38	anti-parallel
Strand 3	I	95	100	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	69	72	first strand
Strand 2	I	79	82	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	574	first strand
Strand 2	B	579	580	anti-parallel
Strand 3	B	130	133	anti-parallel
Strand 4	C	677	679	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	403	first strand
Strand 2	B	388	393	anti-parallel
Strand 3	B	371	383	anti-parallel
Strand 4	B	150	158	anti-parallel
Strand 5	B	454	462	anti-parallel
Strand 6	B	438	440	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	403	first strand
Strand 2	B	388	393	anti-parallel
Strand 3	B	371	383	anti-parallel
Strand 4	B	150	158	anti-parallel
Strand 5	B	454	462	anti-parallel
Strand 6	B	445	448	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	197	first strand
Strand 2	B	163	181	anti-parallel
Strand 3	B	269	271	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	252	254	anti-parallel
Strand 3	B	274	286	anti-parallel
Strand 4	B	163	181	anti-parallel
Strand 5	B	355	360	anti-parallel
Strand 6	B	347	352	anti-parallel
Strand 7	B	325	328	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	237	239	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	221	first strand
Strand 2	B	224	229	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	300	301	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	595	first strand
Strand 2	B	613	618	anti-parallel
Strand 3	B	624	629	anti-parallel
Strand 4	B	635	636	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	609	first strand
Strand 2	B	642	644	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	655	first strand
Strand 2	B	658	663	anti-parallel
Strand 3	B	667	672	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	20	first strand
Strand 2	N	74	75	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	23	24	first strand
Strand 2	N	70	71	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	35	first strand
Strand 2	N	88	90	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	48	49	first strand
Strand 2	N	53	54	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	124	126	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	51	first strand
Strand 2	J	32	38	anti-parallel
Strand 3	J	95	100	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	69	72	first strand
Strand 2	J	79	82	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	403	first strand
Strand 2	C	388	393	anti-parallel
Strand 3	C	371	383	anti-parallel
Strand 4	C	150	158	anti-parallel
Strand 5	C	454	462	anti-parallel
Strand 6	C	438	440	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	403	first strand
Strand 2	C	388	393	anti-parallel
Strand 3	C	371	383	anti-parallel
Strand 4	C	150	158	anti-parallel
Strand 5	C	454	462	anti-parallel
Strand 6	C	445	448	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	197	first strand
Strand 2	C	163	181	anti-parallel
Strand 3	C	269	271	anti-parallel

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There are 7 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	242	first strand
Strand 2	C	252	254	anti-parallel
Strand 3	C	274	286	anti-parallel
Strand 4	C	163	181	anti-parallel
Strand 5	C	355	360	anti-parallel
Strand 6	C	347	352	anti-parallel
Strand 7	C	325	328	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	237	239	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	221	first strand
Strand 2	C	224	229	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	300	301	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	591	595	first strand
Strand 2	C	613	618	anti-parallel
Strand 3	C	624	629	anti-parallel
Strand 4	C	635	636	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	607	609	first strand
Strand 2	C	642	644	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	655	first strand
Strand 2	C	658	663	anti-parallel
Strand 3	C	667	672	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VN1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VN1