Analysis of interatomic Contacts of Structural Units in PDB entry:
6VO0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VO0 entry

There are 12 chains in PDB entry 6VO0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	ASP 109
H	ARG 2	VAL 109
A	ALA 31	ARG 503
B	GLY 521	LEU 663
J	ASP 1	ASP 109
G	ARG 2	VAL 109
C	ALA 31	ARG 503
E	GLY 521	LEU 663
K	ASP 1	ASP 109
I	ARG 2	VAL 109
D	ALA 31	ARG 503
F	GLY 521	LEU 663

There are 60 helices in PDB entry 6VO0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	59	62	Right-handed 310
Helix 2	AA2	L	79	83	Right-handed 310
Helix 3	AA3	H	61	64	Right-handed 310
Helix 4	AA4	H	83	87	Right-handed 310
Helix 5	AA5	A	98	115	Right-handed alpha
Helix 6	AA6	A	122	126	Right-handed 310
Helix 7	AA7	A	139	151	Right-handed 310
Helix 8	AA8	A	195	198	Right-handed 310
Helix 9	AA9	A	334	354	Right-handed alpha
Helix 10	AB1	A	368	373	Right-handed alpha
Helix 11	AB2	A	377	381	Right-handed 310
Helix 12	AB3	A	387	390	Right-handed 310
Helix 13	AB4	A	476	481	Right-handed alpha
Helix 14	AB5	B	523	528	Right-handed 310
Helix 15	AB6	B	529	534	Right-handed alpha
Helix 16	AB7	B	536	543	Right-handed alpha
Helix 17	AB8	B	569	596	Right-handed alpha
Helix 18	AB9	B	618	626	Right-handed alpha
Helix 19	AC1	B	627	635	Right-handed alpha
Helix 20	AC2	B	639	662	Right-handed alpha
Helix 21	AC3	J	59	62	Right-handed 310
Helix 22	AC4	J	79	83	Right-handed 310
Helix 23	AC5	G	61	64	Right-handed 310
Helix 24	AC6	G	83	87	Right-handed 310
Helix 25	AC7	C	98	115	Right-handed alpha
Helix 26	AC8	C	122	126	Right-handed 310
Helix 27	AC9	C	139	151	Right-handed 310
Helix 28	AD1	C	195	198	Right-handed 310
Helix 29	AD2	C	334	354	Right-handed alpha
Helix 30	AD3	C	368	373	Right-handed alpha
Helix 31	AD4	C	377	381	Right-handed 310
Helix 32	AD5	C	387	390	Right-handed 310
Helix 33	AD6	C	476	481	Right-handed alpha
Helix 34	AD7	E	523	528	Right-handed 310
Helix 35	AD8	E	529	534	Right-handed alpha
Helix 36	AD9	E	536	543	Right-handed alpha
Helix 37	AE1	E	569	596	Right-handed alpha
Helix 38	AE2	E	618	626	Right-handed alpha
Helix 39	AE3	E	627	635	Right-handed alpha
Helix 40	AE4	E	639	662	Right-handed alpha
Helix 41	AE5	K	59	62	Right-handed 310
Helix 42	AE6	K	79	83	Right-handed 310
Helix 43	AE7	I	61	64	Right-handed 310
Helix 44	AE8	I	83	87	Right-handed 310
Helix 45	AE9	D	98	115	Right-handed alpha
Helix 46	AF1	D	122	126	Right-handed 310
Helix 47	AF2	D	139	151	Right-handed 310
Helix 48	AF3	D	195	198	Right-handed 310
Helix 49	AF4	D	334	354	Right-handed alpha
Helix 50	AF5	D	368	373	Right-handed alpha
Helix 51	AF6	D	377	381	Right-handed 310
Helix 52	AF7	D	387	390	Right-handed 310
Helix 53	AF8	D	476	481	Right-handed alpha
Helix 54	AF9	F	523	528	Right-handed 310
Helix 55	AG1	F	529	534	Right-handed alpha
Helix 56	AG2	F	536	543	Right-handed alpha
Helix 57	AG3	F	569	596	Right-handed alpha
Helix 58	AG4	F	618	626	Right-handed alpha
Helix 59	AG5	F	627	635	Right-handed alpha
Helix 60	AG6	F	639	662	Right-handed alpha

There are 48 sheets in PDB entry 6VO0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	64	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	98	107	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	50	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	89	96	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	89	96	anti-parallel
Strand 5	H	107	108	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	604	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	86	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	181	183	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	176	177	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	169	173	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	284	312	anti-parallel
Strand 3	A	329	331	anti-parallel
Strand 4	A	416	421	anti-parallel
Strand 5	A	382	385	anti-parallel
Strand 6	A	374	376	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	465	470	anti-parallel
Strand 4	A	358	361	parallel
Strand 5	A	393	394	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	284	312	anti-parallel
Strand 3	A	441	456	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	64	67	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	98	107	parallel
Strand 3	J	84	89	anti-parallel
Strand 4	J	34	38	anti-parallel
Strand 5	J	45	50	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	76	81	anti-parallel
Strand 4	G	67	71	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	89	96	anti-parallel
Strand 5	G	100	103	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	89	96	anti-parallel
Strand 5	G	107	108	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	E	603	604	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	86	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	181	183	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	176	177	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	169	173	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	432	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	323	first strand
Strand 2	C	284	312	anti-parallel
Strand 3	C	329	331	anti-parallel
Strand 4	C	416	421	anti-parallel
Strand 5	C	382	385	anti-parallel
Strand 6	C	374	376	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	441	456	anti-parallel
Strand 3	C	465	470	anti-parallel
Strand 4	C	358	361	parallel
Strand 5	C	393	394	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	284	312	anti-parallel
Strand 3	C	441	456	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	64	67	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	14	first strand
Strand 2	K	98	107	parallel
Strand 3	K	84	89	anti-parallel
Strand 4	K	34	38	anti-parallel
Strand 5	K	45	50	anti-parallel
Strand 6	K	53	54	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	76	81	anti-parallel
Strand 4	I	67	71	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	89	96	anti-parallel
Strand 5	I	100	103	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	89	96	anti-parallel
Strand 5	I	107	108	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	499	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	F	603	604	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	486	491	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	242	245	anti-parallel
Strand 5	D	83	86	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	216	218	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	236	239	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	190	193	anti-parallel
Strand 3	D	181	183	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	176	177	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	169	173	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	432	435	parallel
Strand 3	D	423	424	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	323	first strand
Strand 2	D	284	312	anti-parallel
Strand 3	D	329	331	anti-parallel
Strand 4	D	416	421	anti-parallel
Strand 5	D	382	385	anti-parallel
Strand 6	D	374	376	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	441	456	anti-parallel
Strand 3	D	465	470	anti-parallel
Strand 4	D	358	361	parallel
Strand 5	D	393	394	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	284	312	anti-parallel
Strand 3	D	441	456	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VO0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VO0