Analysis of interatomic Contacts of Structural Units in PDB entry:
6VO3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VO3 entry

There are 12 chains in PDB entry 6VO3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	SER 113
L	GLU 1	ILE 106
A	TRP 35	LYS 502
B	LEU 523	ASP 664
G	GLN 1	SER 113
J	GLU 1	ILE 106
C	TRP 35	LYS 502
E	LEU 523	ASP 664
I	GLN 1	SER 113
K	GLU 1	ILE 106
D	TRP 35	LYS 502
F	LEU 523	ASP 664

There are 57 helices in PDB entry 6VO3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	25	31	Right-handed alpha
Helix 2	AA2	H	60	66	Right-handed alpha
Helix 3	AA3	H	83	87	Right-handed 310
Helix 4	AA4	L	77	83	Right-handed 310
Helix 5	AA5	A	70	74	Right-handed 310
Helix 6	AA6	A	98	117	Right-handed alpha
Helix 7	AA7	A	122	126	Right-handed 310
Helix 8	AA8	A	334	353	Right-handed alpha
Helix 9	AA9	A	368	373	Right-handed alpha
Helix 10	AB1	A	387	390	Right-handed 310
Helix 11	AB2	A	425	429	Right-handed 310
Helix 12	AB3	A	474	484	Right-handed alpha
Helix 13	AB4	B	523	528	Right-handed 310
Helix 14	AB5	B	532	541	Right-handed alpha
Helix 15	AB6	B	570	596	Right-handed alpha
Helix 16	AB7	B	618	624	Right-handed alpha
Helix 17	AB8	B	627	636	Right-handed alpha
Helix 18	AB9	B	638	651	Right-handed alpha
Helix 19	AC1	B	651	664	Right-handed alpha
Helix 20	AC2	G	25	31	Right-handed alpha
Helix 21	AC3	G	60	66	Right-handed alpha
Helix 22	AC4	G	83	87	Right-handed 310
Helix 23	AC5	J	77	83	Right-handed 310
Helix 24	AC6	C	70	74	Right-handed 310
Helix 25	AC7	C	98	117	Right-handed alpha
Helix 26	AC8	C	122	126	Right-handed 310
Helix 27	AC9	C	334	353	Right-handed alpha
Helix 28	AD1	C	368	373	Right-handed alpha
Helix 29	AD2	C	387	390	Right-handed 310
Helix 30	AD3	C	425	429	Right-handed 310
Helix 31	AD4	C	474	484	Right-handed alpha
Helix 32	AD5	E	523	528	Right-handed 310
Helix 33	AD6	E	532	541	Right-handed alpha
Helix 34	AD7	E	570	596	Right-handed alpha
Helix 35	AD8	E	618	624	Right-handed alpha
Helix 36	AD9	E	627	636	Right-handed alpha
Helix 37	AE1	E	638	651	Right-handed alpha
Helix 38	AE2	E	651	664	Right-handed alpha
Helix 39	AE3	I	25	31	Right-handed alpha
Helix 40	AE4	I	60	66	Right-handed alpha
Helix 41	AE5	I	83	87	Right-handed 310
Helix 42	AE6	K	77	83	Right-handed 310
Helix 43	AE7	D	70	74	Right-handed 310
Helix 44	AE8	D	98	117	Right-handed alpha
Helix 45	AE9	D	122	126	Right-handed 310
Helix 46	AF1	D	334	353	Right-handed alpha
Helix 47	AF2	D	368	373	Right-handed alpha
Helix 48	AF3	D	387	390	Right-handed 310
Helix 49	AF4	D	425	429	Right-handed 310
Helix 50	AF5	D	474	484	Right-handed alpha
Helix 51	AF6	F	523	528	Right-handed 310
Helix 52	AF7	F	532	541	Right-handed alpha
Helix 53	AF8	F	570	596	Right-handed alpha
Helix 54	AF9	F	618	624	Right-handed alpha
Helix 55	AG1	F	627	636	Right-handed alpha
Helix 56	AG2	F	638	651	Right-handed alpha
Helix 57	AG3	F	651	664	Right-handed alpha

There are 45 sheets in PDB entry 6VO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	58	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	102	104	anti-parallel
Strand 5	H	3	6	parallel
Strand 6	H	18	23	anti-parallel
Strand 7	H	77	82	anti-parallel
Strand 8	H	67	72	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	498	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	B	603	604	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	177	first strand
Strand 2	A	154	161	anti-parallel
Strand 3	A	129	131	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	451	456	anti-parallel
Strand 3	A	284	287	anti-parallel
Strand 4	A	271	273	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	451	456	anti-parallel
Strand 3	A	466	470	anti-parallel
Strand 4	A	359	361	parallel
Strand 5	A	394	395	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	294	310	anti-parallel
Strand 3	A	330	333	anti-parallel
Strand 4	A	414	421	anti-parallel
Strand 5	A	381	385	anti-parallel
Strand 6	A	374	378	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	294	310	anti-parallel
Strand 3	A	441	447	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	95	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	56	58	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	95	anti-parallel
Strand 4	G	102	104	anti-parallel
Strand 5	G	3	6	parallel
Strand 6	G	18	23	anti-parallel
Strand 7	G	77	82	anti-parallel
Strand 8	G	67	72	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	62	65	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	102	105	parallel
Strand 3	J	85	90	anti-parallel
Strand 4	J	34	38	anti-parallel
Strand 5	J	45	48	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	102	105	parallel
Strand 3	J	85	90	anti-parallel
Strand 4	J	97	98	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	498	first strand
Strand 2	C	36	40	anti-parallel
Strand 3	E	603	604	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	53	56	parallel
Strand 3	C	216	218	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	177	first strand
Strand 2	C	154	161	anti-parallel
Strand 3	C	129	131	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	432	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	451	456	anti-parallel
Strand 3	C	284	287	anti-parallel
Strand 4	C	271	273	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	451	456	anti-parallel
Strand 3	C	466	470	anti-parallel
Strand 4	C	359	361	parallel
Strand 5	C	394	395	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	323	first strand
Strand 2	C	294	310	anti-parallel
Strand 3	C	330	333	anti-parallel
Strand 4	C	414	421	anti-parallel
Strand 5	C	381	385	anti-parallel
Strand 6	C	374	378	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	323	first strand
Strand 2	C	294	310	anti-parallel
Strand 3	C	441	447	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	95	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	56	58	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	95	anti-parallel
Strand 4	I	102	104	anti-parallel
Strand 5	I	3	6	parallel
Strand 6	I	18	23	anti-parallel
Strand 7	I	77	82	anti-parallel
Strand 8	I	67	72	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	65	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	102	105	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	34	38	anti-parallel
Strand 5	K	45	48	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	102	105	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	97	98	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	498	first strand
Strand 2	D	36	40	anti-parallel
Strand 3	F	603	604	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	486	491	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	242	245	anti-parallel
Strand 5	D	84	85	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	53	56	parallel
Strand 3	D	216	218	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	236	239	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	177	first strand
Strand 2	D	154	161	anti-parallel
Strand 3	D	129	131	anti-parallel
Strand 4	D	190	193	anti-parallel
Strand 5	D	181	183	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	432	435	parallel
Strand 3	D	423	424	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	451	456	anti-parallel
Strand 3	D	284	287	anti-parallel
Strand 4	D	271	273	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	451	456	anti-parallel
Strand 3	D	466	470	anti-parallel
Strand 4	D	359	361	parallel
Strand 5	D	394	395	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	323	first strand
Strand 2	D	294	310	anti-parallel
Strand 3	D	330	333	anti-parallel
Strand 4	D	414	421	anti-parallel
Strand 5	D	381	385	anti-parallel
Strand 6	D	374	378	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	323	first strand
Strand 2	D	294	310	anti-parallel
Strand 3	D	441	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VO3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VO3