Analysis of interatomic Contacts of Structural Units in PDB entry:
6VO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VO5 entry

There are 10 chains in PDB entry 6VO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 20LYS 26
A
 ASN 28ASP 100
A
 VAL 102THR 167
A
 ARG 169ASP 341
B
 GLY 18LYS 26
B
 ASN 28ASP 100
B
 VAL 102THR 167
B
 ARG 169THR 340
C
 LYS 5ARG 19
D
 GLY 6ARG 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 6VO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 24Right-handed 310
Helix 2
AA2
A
29 32Right-handed alpha
Helix 3
AA3
A
40 45Right-handed 310
Helix 4
AA4
A
46 48Right-handed 310
Helix 5
AA5
A
56 61Right-handed alpha
Helix 6
AA6
A
96 101Right-handed alpha
Helix 7
AA7
A
106 113Right-handed alpha
Helix 8
AA8
A
122 131Right-handed alpha
Helix 9
AA9
A
132 136Right-handed 310
Helix 10
AB1
A
170 186Right-handed alpha
Helix 11
AB2
A
245 248Right-handed 310
Helix 12
AB3
A
251 266Right-handed alpha
Helix 13
AB4
A
279 295Right-handed alpha
Helix 14
AB5
A
297 300Right-handed 310
Helix 15
AB6
A
301 307Right-handed alpha
Helix 16
AB7
A
310 322Right-handed alpha
Helix 17
AB8
A
324 339Right-handed alpha
Helix 18
AB9
B
21 24Right-handed 310
Helix 19
AC1
B
29 32Right-handed alpha
Helix 20
AC2
B
40 50Right-handed 310
Helix 21
AC3
B
56 61Right-handed alpha
Helix 22
AC4
B
96 101Right-handed alpha
Helix 23
AC5
B
106 113Right-handed alpha
Helix 24
AC6
B
122 132Right-handed alpha
Helix 25
AC7
B
133 136Right-handed 310
Helix 26
AC8
B
170 186Right-handed alpha
Helix 27
AC9
B
245 248Right-handed 310
Helix 28
AD1
B
251 266Right-handed alpha
Helix 29
AD2
B
279 295Right-handed alpha
Helix 30
AD3
B
297 300Right-handed 310
Helix 31
AD4
B
301 307Right-handed alpha
Helix 32
AD5
B
310 322Right-handed alpha
Helix 33
AD6
B
324 339Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6VO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
73 79parallel
Strand 4
A
85 90anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 148first strand
Strand 2
A
157 164anti-parallel
Strand 3
A
199 210anti-parallel
Strand 4
A
213 229anti-parallel
Strand 5
A
233 243anti-parallel
Strand 6
A
274 275parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
73 79parallel
Strand 3
B
85 90anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 148first strand
Strand 2
B
157 164anti-parallel
Strand 3
B
199 210anti-parallel
Strand 4
B
213 229anti-parallel
Strand 5
B
233 243anti-parallel
Strand 6
B
274 275parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il