Analysis of interatomic Contacts of Structural Units in PDB entry:
6VO6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VO6 entry

There are 4 chains in PDB entry 6VO6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PHE 312
B	SER 2	ASN 311
C	SER 2	ASN 311
D	SER 2	PHE 312

There are 53 helices in PDB entry 6VO6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	60	69	Right-handed alpha
Helix 4	AA4	A	82	89	Right-handed alpha
Helix 5	AA5	A	89	98	Right-handed alpha
Helix 6	AA6	A	98	108	Right-handed alpha
Helix 7	AA7	A	142	159	Right-handed alpha
Helix 8	AA8	A	180	193	Right-handed alpha
Helix 9	AA9	A	209	222	Right-handed alpha
Helix 10	AB1	A	222	227	Right-handed alpha
Helix 11	AB2	A	242	253	Right-handed alpha
Helix 12	AB3	A	276	281	Right-handed alpha
Helix 13	AB4	A	289	302	Right-handed alpha
Helix 14	AB5	B	14	25	Right-handed alpha
Helix 15	AB6	B	42	46	Right-handed 310
Helix 16	AB7	B	60	69	Right-handed alpha
Helix 17	AB8	B	82	89	Right-handed alpha
Helix 18	AB9	B	89	98	Right-handed alpha
Helix 19	AC1	B	98	108	Right-handed alpha
Helix 20	AC2	B	127	129	Right-handed 310
Helix 21	AC3	B	142	159	Right-handed alpha
Helix 22	AC4	B	180	192	Right-handed alpha
Helix 23	AC5	B	209	222	Right-handed alpha
Helix 24	AC6	B	222	227	Right-handed alpha
Helix 25	AC7	B	241	251	Right-handed alpha
Helix 26	AC8	B	276	282	Right-handed alpha
Helix 27	AC9	B	289	301	Right-handed alpha
Helix 28	AD1	C	14	25	Right-handed alpha
Helix 29	AD2	C	42	46	Right-handed 310
Helix 30	AD3	C	60	69	Right-handed alpha
Helix 31	AD4	C	82	89	Right-handed alpha
Helix 32	AD5	C	89	98	Right-handed alpha
Helix 33	AD6	C	98	108	Right-handed alpha
Helix 34	AD7	C	142	159	Right-handed alpha
Helix 35	AD8	C	180	193	Right-handed alpha
Helix 36	AD9	C	209	222	Right-handed alpha
Helix 37	AE1	C	222	227	Right-handed alpha
Helix 38	AE2	C	241	251	Right-handed alpha
Helix 39	AE3	C	276	282	Right-handed alpha
Helix 40	AE4	C	289	302	Right-handed alpha
Helix 41	AE5	D	14	25	Right-handed alpha
Helix 42	AE6	D	42	46	Right-handed 310
Helix 43	AE7	D	60	71	Right-handed alpha
Helix 44	AE8	D	82	89	Right-handed alpha
Helix 45	AE9	D	89	98	Right-handed alpha
Helix 46	AF1	D	98	108	Right-handed alpha
Helix 47	AF2	D	142	159	Right-handed alpha
Helix 48	AF3	D	180	193	Right-handed alpha
Helix 49	AF4	D	209	222	Right-handed alpha
Helix 50	AF5	D	222	227	Right-handed alpha
Helix 51	AF6	D	242	253	Right-handed alpha
Helix 52	AF7	D	276	282	Right-handed alpha
Helix 53	AF8	D	289	301	Right-handed alpha

There are 17 sheets in PDB entry 6VO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	28	33	parallel
Strand 3	A	4	8	parallel
Strand 4	A	73	76	parallel
Strand 5	A	113	119	parallel
Strand 6	A	161	166	parallel
Strand 7	A	229	233	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	170	first strand
Strand 2	A	206	208	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	257	260	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	240	241	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	55	first strand
Strand 2	B	28	33	parallel
Strand 3	B	4	8	parallel
Strand 4	B	73	76	parallel
Strand 5	B	113	119	parallel
Strand 6	B	161	166	parallel
Strand 7	B	229	233	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	273	274	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	206	208	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	257	260	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	28	33	parallel
Strand 3	C	4	8	parallel
Strand 4	C	73	76	parallel
Strand 5	C	113	119	parallel
Strand 6	C	161	166	parallel
Strand 7	C	229	233	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	273	274	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	170	first strand
Strand 2	C	206	208	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	257	260	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	55	first strand
Strand 2	D	28	33	parallel
Strand 3	D	4	8	parallel
Strand 4	D	73	76	parallel
Strand 5	D	113	119	parallel
Strand 6	D	161	166	parallel
Strand 7	D	229	233	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	272	274	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	170	first strand
Strand 2	D	206	208	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	257	260	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	240	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VO6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VO6