Analysis of interatomic Contacts of Structural Units in PDB entry:
6VO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VO8 entry

There are 2 chains in PDB entry 6VO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2MET 304
B
 SER 2MET 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6VO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
82 89Right-handed alpha
Helix 5
AA5
A
89 98Right-handed alpha
Helix 6
AA6
A
98 108Right-handed alpha
Helix 7
AA7
A
142 157Right-handed alpha
Helix 8
AA8
A
180 193Right-handed alpha
Helix 9
AA9
A
209 222Right-handed alpha
Helix 10
AB1
A
222 227Right-handed alpha
Helix 11
AB2
A
241 251Right-handed alpha
Helix 12
AB3
A
276 282Right-handed alpha
Helix 13
AB4
A
289 302Right-handed alpha
Helix 14
AB5
B
14 25Right-handed alpha
Helix 15
AB6
B
42 46Right-handed 310
Helix 16
AB7
B
60 69Right-handed alpha
Helix 17
AB8
B
82 88Right-handed alpha
Helix 18
AB9
B
89 98Right-handed alpha
Helix 19
AC1
B
98 107Right-handed alpha
Helix 20
AC2
B
142 159Right-handed alpha
Helix 21
AC3
B
180 193Right-handed alpha
Helix 22
AC4
B
209 222Right-handed alpha
Helix 23
AC5
B
222 227Right-handed alpha
Helix 24
AC6
B
242 253Right-handed alpha
Helix 25
AC7
B
276 281Right-handed alpha
Helix 26
AC8
B
289 302Right-handed alpha
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There are 8 sheets in PDB entry 6VO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
28 33parallel
Strand 3
A
4 8parallel
Strand 4
A
73 76parallel
Strand 5
A
113 119parallel
Strand 6
A
161 166parallel
Strand 7
A
230 233parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
273 274parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
206 208parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
A
257 260parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
28 33parallel
Strand 3
B
4 8parallel
Strand 4
B
73 76parallel
Strand 5
B
113 118parallel
Strand 6
B
161 166parallel
Strand 7
B
230 233parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
206 208parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
257 260parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
240 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il