Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VOF entry

There are 26 chains in PDB entry 6VOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 8	LEU 503
B	ILE 4	GLN 504
C	ILE 4	GLN 504
D	ASN 19	LEU 496
E	LYS 18	LEU 496
F	LYS 17	SER 494
d	ASP 72	GLU 249
g	ASN 43	CYS 363
e	THR 2	THR 131
I	ILE 32	ILE 182
J	ASP 85	PRO 220
a	HIS 25	GLU 244
M	PRO 3	VAL 81
N	PRO 3	VAL 81
O	PRO 3	VAL 81
P	PRO 3	VAL 81
Q	PRO 3	VAL 81
R	PRO 3	VAL 81
S	PRO 3	VAL 81
T	PRO 3	VAL 81
U	PRO 3	VAL 81
V	PRO 3	VAL 81
W	PRO 3	VAL 81
X	PRO 3	VAL 81
Y	PRO 3	VAL 81
Z	PRO 3	VAL 81

There are180 helices in PDB entry 6VOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	25	Right-handed alpha
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	101	105	Right-handed 310
Helix 4	AA4	A	151	158	Right-handed alpha
Helix 5	AA5	A	175	187	Right-handed alpha
Helix 6	AA6	A	188	190	Right-handed 310
Helix 7	AA7	A	202	216	Right-handed alpha
Helix 8	AA8	A	217	221	Right-handed 310
Helix 9	AA9	A	232	253	Right-handed alpha
Helix 10	AB1	A	263	278	Right-handed alpha
Helix 11	AB2	A	283	287	Right-handed 310
Helix 12	AB3	A	288	289	Right-handed 310
Helix 13	AB4	A	290	301	Right-handed alpha
Helix 14	AB5	A	329	337	Right-handed alpha
Helix 15	AB6	A	346	351	Right-handed alpha
Helix 16	AB7	A	373	395	Right-handed alpha
Helix 17	AB8	A	404	422	Right-handed alpha
Helix 18	AB9	A	430	444	Right-handed alpha
Helix 19	AC1	A	445	449	Right-handed 310
Helix 20	AC2	A	450	469	Right-handed alpha
Helix 21	AC3	A	471	479	Right-handed alpha
Helix 22	AC4	A	483	499	Right-handed alpha
Helix 23	AC5	B	11	19	Right-handed alpha
Helix 24	AC6	B	56	60	Right-handed 310
Helix 25	AC7	B	101	105	Right-handed 310
Helix 26	AC8	B	152	158	Right-handed alpha
Helix 27	AC9	B	175	187	Right-handed alpha
Helix 28	AD1	B	202	217	Right-handed alpha
Helix 29	AD2	B	218	222	Right-handed 310
Helix 30	AD3	B	232	253	Right-handed alpha
Helix 31	AD4	B	263	277	Right-handed alpha
Helix 32	AD5	B	283	287	Right-handed 310
Helix 33	AD6	B	288	289	Right-handed 310
Helix 34	AD7	B	290	300	Right-handed alpha
Helix 35	AD8	B	329	339	Right-handed alpha
Helix 36	AD9	B	347	352	Right-handed alpha
Helix 37	AE1	B	367	372	Right-handed 310
Helix 38	AE2	B	373	397	Right-handed alpha
Helix 39	AE3	B	404	422	Right-handed alpha
Helix 40	AE4	B	430	443	Right-handed alpha
Helix 41	AE5	B	452	469	Right-handed alpha
Helix 42	AE6	B	469	480	Right-handed alpha
Helix 43	AE7	B	483	502	Right-handed alpha
Helix 44	AE8	C	9	18	Right-handed alpha
Helix 45	AE9	C	101	105	Right-handed 310
Helix 46	AF1	C	151	157	Right-handed alpha
Helix 47	AF2	C	175	186	Right-handed alpha
Helix 48	AF3	C	202	217	Right-handed alpha
Helix 49	AF4	C	218	221	Right-handed 310
Helix 50	AF5	C	232	252	Right-handed alpha
Helix 51	AF6	C	264	278	Right-handed alpha
Helix 52	AF7	C	283	287	Right-handed 310
Helix 53	AF8	C	288	289	Right-handed 310
Helix 54	AF9	C	290	301	Right-handed alpha
Helix 55	AG1	C	323	326	Right-handed 310
Helix 56	AG2	C	330	338	Right-handed alpha
Helix 57	AG3	C	346	352	Right-handed alpha
Helix 58	AG4	C	367	372	Right-handed 310
Helix 59	AG5	C	373	381	Right-handed alpha
Helix 60	AG6	C	382	397	Right-handed alpha
Helix 61	AG7	C	404	421	Right-handed alpha
Helix 62	AG8	C	430	443	Right-handed alpha
Helix 63	AG9	C	444	449	Right-handed alpha
Helix 64	AH1	C	453	469	Right-handed alpha
Helix 65	AH2	C	469	480	Right-handed alpha
Helix 66	AH3	C	483	503	Right-handed alpha
Helix 67	AH4	D	103	107	Right-handed 310
Helix 68	AH5	D	153	159	Right-handed alpha
Helix 69	AH6	D	177	193	Right-handed alpha
Helix 70	AH7	D	205	219	Right-handed alpha
Helix 71	AH8	D	242	263	Right-handed alpha
Helix 72	AH9	D	274	290	Right-handed alpha
Helix 73	AI1	D	301	311	Right-handed alpha
Helix 74	AI2	D	329	333	Right-handed 310
Helix 75	AI3	D	336	344	Right-handed alpha
Helix 76	AI4	D	353	360	Right-handed alpha
Helix 77	AI5	D	376	381	Right-handed alpha
Helix 78	AI6	D	381	409	Right-handed alpha
Helix 79	AI7	D	414	431	Right-handed alpha
Helix 80	AI8	D	450	464	Right-handed alpha
Helix 81	AI9	D	470	474	Right-handed 310
Helix 82	AJ1	D	479	495	Right-handed alpha
Helix 83	AJ2	E	103	107	Right-handed 310
Helix 84	AJ3	E	153	160	Right-handed alpha
Helix 85	AJ4	E	177	190	Right-handed alpha
Helix 86	AJ5	E	205	219	Right-handed alpha
Helix 87	AJ6	E	242	263	Right-handed alpha
Helix 88	AJ7	E	274	289	Right-handed alpha
Helix 89	AJ8	E	301	313	Right-handed alpha
Helix 90	AJ9	E	330	333	Right-handed 310
Helix 91	AK1	E	336	343	Right-handed alpha
Helix 92	AK2	E	353	359	Right-handed alpha
Helix 93	AK3	E	376	381	Right-handed alpha
Helix 94	AK4	E	383	409	Right-handed alpha
Helix 95	AK5	E	414	431	Right-handed alpha
Helix 96	AK6	E	438	443	Right-handed alpha
Helix 97	AK7	E	450	462	Right-handed alpha
Helix 98	AK8	E	465	469	Right-handed 310
Helix 99	AK9	E	470	475	Right-handed 310
Helix 100	AL1	E	479	496	Right-handed alpha
Helix 101	AL2	F	103	106	Right-handed 310
Helix 102	AL3	F	153	160	Right-handed alpha
Helix 103	AL4	F	177	190	Right-handed alpha
Helix 104	AL5	F	205	220	Right-handed alpha
Helix 105	AL6	F	242	263	Right-handed alpha
Helix 106	AL7	F	274	290	Right-handed alpha
Helix 107	AL8	F	301	312	Right-handed alpha
Helix 108	AL9	F	329	333	Right-handed 310
Helix 109	AM1	F	336	346	Right-handed alpha
Helix 110	AM2	F	353	360	Right-handed alpha
Helix 111	AM3	F	376	381	Right-handed alpha
Helix 112	AM4	F	381	406	Right-handed alpha
Helix 113	AM5	F	414	431	Right-handed alpha
Helix 114	AM6	F	450	464	Right-handed alpha
Helix 115	AM7	F	470	475	Right-handed 310
Helix 116	AM8	F	479	493	Right-handed alpha
Helix 117	AM9	d	73	90	Right-handed alpha
Helix 118	AN1	d	91	107	Right-handed alpha
Helix 119	AN2	d	108	117	Right-handed alpha
Helix 120	AN3	d	121	137	Right-handed alpha
Helix 121	AN4	d	139	152	Right-handed alpha
Helix 122	AN5	d	153	156	Right-handed 310
Helix 123	AN6	d	157	173	Right-handed alpha
Helix 124	AN7	d	187	203	Right-handed alpha
Helix 125	AN8	d	237	248	Right-handed alpha
Helix 126	AN9	g	44	82	Right-handed alpha
Helix 127	AO1	g	82	100	Right-handed alpha
Helix 128	AO2	g	132	152	Right-handed alpha
Helix 129	AO3	g	161	170	Right-handed alpha
Helix 130	AO4	g	187	204	Right-handed alpha
Helix 131	AO5	g	291	362	Right-handed alpha
Helix 132	AO6	e	92	104	Right-handed alpha
Helix 133	AO7	e	110	131	Right-handed alpha
Helix 134	AO8	I	33	158	Right-handed alpha
Helix 135	AO9	I	162	182	Right-handed alpha
Helix 136	AP1	J	88	202	Right-handed alpha
Helix 137	AP2	J	204	219	Right-handed alpha
Helix 138	AP3	a	37	58	Right-handed alpha
Helix 139	AP4	a	68	87	Right-handed alpha
Helix 140	AP5	a	94	114	Right-handed alpha
Helix 141	AP6	a	129	132	Right-handed 310
Helix 142	AP7	a	133	155	Right-handed alpha
Helix 143	AP8	a	171	208	Right-handed alpha
Helix 144	AP9	a	212	244	Right-handed alpha
Helix 145	AQ1	M	4	21	Right-handed alpha
Helix 146	AQ2	M	21	42	Right-handed alpha
Helix 147	AQ3	M	45	77	Right-handed alpha
Helix 148	AQ4	N	4	21	Right-handed alpha
Helix 149	AQ5	N	21	42	Right-handed alpha
Helix 150	AQ6	N	46	76	Right-handed alpha
Helix 151	AQ7	O	4	21	Right-handed alpha
Helix 152	AQ8	O	22	42	Right-handed alpha
Helix 153	AQ9	O	45	76	Right-handed alpha
Helix 154	AR1	P	4	42	Right-handed alpha
Helix 155	AR2	P	45	75	Right-handed alpha
Helix 156	AR3	Q	4	42	Right-handed alpha
Helix 157	AR4	Q	45	76	Right-handed alpha
Helix 158	AR5	R	4	42	Right-handed alpha
Helix 159	AR6	R	45	76	Right-handed alpha
Helix 160	AR7	S	4	42	Right-handed alpha
Helix 161	AR8	S	45	76	Right-handed alpha
Helix 162	AR9	T	4	42	Right-handed alpha
Helix 163	AS1	T	45	76	Right-handed alpha
Helix 164	AS2	U	4	21	Right-handed alpha
Helix 165	AS3	U	23	42	Right-handed alpha
Helix 166	AS4	U	45	76	Right-handed alpha
Helix 167	AS5	V	4	21	Right-handed alpha
Helix 168	AS6	V	21	42	Right-handed alpha
Helix 169	AS7	V	45	78	Right-handed alpha
Helix 170	AS8	W	4	42	Right-handed alpha
Helix 171	AS9	W	45	77	Right-handed alpha
Helix 172	AT1	X	4	21	Right-handed alpha
Helix 173	AT2	X	21	42	Right-handed alpha
Helix 174	AT3	X	45	76	Right-handed alpha
Helix 175	AT4	Y	4	20	Right-handed alpha
Helix 176	AT5	Y	21	42	Right-handed alpha
Helix 177	AT6	Y	45	77	Right-handed alpha
Helix 178	AT7	Z	4	20	Right-handed alpha
Helix 179	AT8	Z	22	42	Right-handed alpha
Helix 180	AT9	Z	45	77	Right-handed alpha

There are 29 sheets in PDB entry 6VOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	53	55	anti-parallel
Strand 3	A	88	91	anti-parallel
Strand 4	A	29	36	anti-parallel
Strand 5	A	39	44	anti-parallel
Strand 6	A	72	77	anti-parallel
Strand 7	A	61	67	anti-parallel
Strand 8	F	20	27	anti-parallel
Strand 9	F	90	92	anti-parallel
Strand 10	F	46	49	anti-parallel
Strand 11	F	61	68	anti-parallel
Strand 12	F	73	78	anti-parallel
Strand 13	F	30	34	anti-parallel
Strand 14	F	20	27	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	126	129	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	170	first strand
Strand 2	A	319	321	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	193	199	parallel
Strand 3	A	257	262	parallel
Strand 4	A	314	316	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	30	33	anti-parallel
Strand 3	E	74	78	anti-parallel
Strand 4	E	61	68	anti-parallel
Strand 5	B	30	36	anti-parallel
Strand 6	E	45	49	first strand
Strand 7	E	92	97	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	30	33	anti-parallel
Strand 3	E	74	78	anti-parallel
Strand 4	E	61	68	anti-parallel
Strand 5	B	88	91	first strand
Strand 6	B	53	55	anti-parallel
Strand 7	B	62	67	anti-parallel
Strand 8	B	72	75	anti-parallel
Strand 9	B	39	42	anti-parallel
Strand 10	B	30	36	anti-parallel
Strand 11	E	45	49	first strand
Strand 12	E	92	97	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	126	129	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	224	228	parallel
Strand 3	B	193	201	parallel
Strand 4	B	257	261	parallel
Strand 5	B	314	316	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	319	321	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	231	232	first strand
Strand 2	C	27	36	anti-parallel
Strand 3	C	88	91	anti-parallel
Strand 4	C	53	55	anti-parallel
Strand 5	C	62	67	anti-parallel
Strand 6	C	71	74	anti-parallel
Strand 7	C	39	44	anti-parallel
Strand 8	C	27	36	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	126	128	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	198	first strand
Strand 2	C	257	262	parallel
Strand 3	C	314	321	parallel
Strand 4	C	167	170	parallel
Strand 5	C	342	343	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	27	first strand
Strand 2	D	30	33	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	60	70	anti-parallel
Strand 5	D	45	50	anti-parallel
Strand 6	D	90	97	anti-parallel
Strand 7	D	21	27	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	129	131	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	162	163	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	272	first strand
Strand 2	D	320	325	parallel
Strand 3	D	167	171	parallel
Strand 4	D	350	352	parallel
Strand 5	D	365	366	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	204	first strand
Strand 2	D	232	238	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	129	131	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	238	first strand
Strand 2	E	197	204	parallel
Strand 3	E	268	272	parallel
Strand 4	E	321	328	parallel
Strand 5	E	167	172	parallel
Strand 6	E	348	351	parallel
Strand 7	E	371	372	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	129	131	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	149	first strand
Strand 2	F	162	163	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	238	first strand
Strand 2	F	200	204	parallel
Strand 3	F	269	273	parallel
Strand 4	F	322	326	parallel
Strand 5	F	167	170	parallel
Strand 6	F	348	350	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	178	179	first strand
Strand 2	d	209	210	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	178	180	first strand
Strand 2	g	156	160	parallel
Strand 3	g	119	123	parallel
Strand 4	g	211	214	parallel
Strand 5	g	226	228	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	253	256	first strand
Strand 2	g	267	270	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	283	284	first strand
Strand 2	e	40	41	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	12	15	first strand
Strand 2	e	3	9	anti-parallel
Strand 3	e	73	78	parallel
Strand 4	e	65	66	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	18	19	first strand
Strand 2	e	3	9	anti-parallel
Strand 3	e	73	78	parallel
Strand 4	e	69	70	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	22	25	first strand
Strand 2	e	30	33	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOF