Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VOG entry

There are 9 chains in PDB entry 6VOG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 8	LEU 503
B	ILE 4	GLN 504
C	ILE 4	GLN 504
D	ASN 19	LEU 496
E	LYS 18	LEU 496
F	LYS 17	SER 494
d	ASP 72	GLU 249
g	ASN 43	CYS 363
e	THR 2	THR 131

There are132 helices in PDB entry 6VOG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	25	Right-handed alpha
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	101	105	Right-handed 310
Helix 4	AA4	A	151	158	Right-handed alpha
Helix 5	AA5	A	175	187	Right-handed alpha
Helix 6	AA6	A	188	190	Right-handed 310
Helix 7	AA7	A	202	216	Right-handed alpha
Helix 8	AA8	A	217	221	Right-handed 310
Helix 9	AA9	A	232	253	Right-handed alpha
Helix 10	AB1	A	263	278	Right-handed alpha
Helix 11	AB2	A	283	287	Right-handed 310
Helix 12	AB3	A	288	289	Right-handed 310
Helix 13	AB4	A	290	301	Right-handed alpha
Helix 14	AB5	A	329	337	Right-handed alpha
Helix 15	AB6	A	346	352	Right-handed alpha
Helix 16	AB7	A	373	395	Right-handed alpha
Helix 17	AB8	A	404	422	Right-handed alpha
Helix 18	AB9	A	430	444	Right-handed alpha
Helix 19	AC1	A	445	449	Right-handed 310
Helix 20	AC2	A	450	469	Right-handed alpha
Helix 21	AC3	A	469	479	Right-handed alpha
Helix 22	AC4	A	483	499	Right-handed alpha
Helix 23	AC5	B	10	19	Right-handed alpha
Helix 24	AC6	B	56	60	Right-handed 310
Helix 25	AC7	B	101	105	Right-handed 310
Helix 26	AC8	B	151	158	Right-handed alpha
Helix 27	AC9	B	175	187	Right-handed alpha
Helix 28	AD1	B	202	217	Right-handed alpha
Helix 29	AD2	B	218	222	Right-handed 310
Helix 30	AD3	B	232	253	Right-handed alpha
Helix 31	AD4	B	263	277	Right-handed alpha
Helix 32	AD5	B	283	287	Right-handed 310
Helix 33	AD6	B	288	289	Right-handed 310
Helix 34	AD7	B	290	300	Right-handed alpha
Helix 35	AD8	B	306	310	Right-handed 310
Helix 36	AD9	B	329	339	Right-handed alpha
Helix 37	AE1	B	347	352	Right-handed alpha
Helix 38	AE2	B	367	372	Right-handed 310
Helix 39	AE3	B	373	395	Right-handed alpha
Helix 40	AE4	B	404	422	Right-handed alpha
Helix 41	AE5	B	430	443	Right-handed alpha
Helix 42	AE6	B	453	469	Right-handed alpha
Helix 43	AE7	B	469	480	Right-handed alpha
Helix 44	AE8	B	483	502	Right-handed alpha
Helix 45	AE9	C	9	18	Right-handed alpha
Helix 46	AF1	C	101	105	Right-handed 310
Helix 47	AF2	C	151	157	Right-handed alpha
Helix 48	AF3	C	175	186	Right-handed alpha
Helix 49	AF4	C	202	217	Right-handed alpha
Helix 50	AF5	C	218	221	Right-handed 310
Helix 51	AF6	C	232	252	Right-handed alpha
Helix 52	AF7	C	264	278	Right-handed alpha
Helix 53	AF8	C	283	287	Right-handed 310
Helix 54	AF9	C	288	289	Right-handed 310
Helix 55	AG1	C	290	301	Right-handed alpha
Helix 56	AG2	C	323	326	Right-handed 310
Helix 57	AG3	C	330	338	Right-handed alpha
Helix 58	AG4	C	346	352	Right-handed alpha
Helix 59	AG5	C	368	372	Right-handed 310
Helix 60	AG6	C	373	381	Right-handed alpha
Helix 61	AG7	C	382	397	Right-handed alpha
Helix 62	AG8	C	404	421	Right-handed alpha
Helix 63	AG9	C	430	443	Right-handed alpha
Helix 64	AH1	C	453	469	Right-handed alpha
Helix 65	AH2	C	470	480	Right-handed alpha
Helix 66	AH3	C	483	503	Right-handed alpha
Helix 67	AH4	D	103	107	Right-handed 310
Helix 68	AH5	D	153	159	Right-handed alpha
Helix 69	AH6	D	177	193	Right-handed alpha
Helix 70	AH7	D	205	219	Right-handed alpha
Helix 71	AH8	D	242	263	Right-handed alpha
Helix 72	AH9	D	274	290	Right-handed alpha
Helix 73	AI1	D	301	311	Right-handed alpha
Helix 74	AI2	D	329	333	Right-handed 310
Helix 75	AI3	D	336	344	Right-handed alpha
Helix 76	AI4	D	353	360	Right-handed alpha
Helix 77	AI5	D	376	381	Right-handed alpha
Helix 78	AI6	D	381	402	Right-handed alpha
Helix 79	AI7	D	404	409	Right-handed alpha
Helix 80	AI8	D	414	431	Right-handed alpha
Helix 81	AI9	D	450	464	Right-handed alpha
Helix 82	AJ1	D	470	474	Right-handed 310
Helix 83	AJ2	D	479	495	Right-handed alpha
Helix 84	AJ3	E	103	107	Right-handed 310
Helix 85	AJ4	E	153	160	Right-handed alpha
Helix 86	AJ5	E	177	190	Right-handed alpha
Helix 87	AJ6	E	205	219	Right-handed alpha
Helix 88	AJ7	E	242	263	Right-handed alpha
Helix 89	AJ8	E	274	289	Right-handed alpha
Helix 90	AJ9	E	301	313	Right-handed alpha
Helix 91	AK1	E	330	333	Right-handed 310
Helix 92	AK2	E	336	343	Right-handed alpha
Helix 93	AK3	E	353	359	Right-handed alpha
Helix 94	AK4	E	376	381	Right-handed alpha
Helix 95	AK5	E	383	409	Right-handed alpha
Helix 96	AK6	E	414	432	Right-handed alpha
Helix 97	AK7	E	438	443	Right-handed alpha
Helix 98	AK8	E	450	464	Right-handed alpha
Helix 99	AK9	E	470	474	Right-handed 310
Helix 100	AL1	E	479	496	Right-handed alpha
Helix 101	AL2	F	103	107	Right-handed 310
Helix 102	AL3	F	153	160	Right-handed alpha
Helix 103	AL4	F	178	190	Right-handed alpha
Helix 104	AL5	F	205	219	Right-handed alpha
Helix 105	AL6	F	242	263	Right-handed alpha
Helix 106	AL7	F	274	290	Right-handed alpha
Helix 107	AL8	F	301	312	Right-handed alpha
Helix 108	AL9	F	336	346	Right-handed alpha
Helix 109	AM1	F	353	360	Right-handed alpha
Helix 110	AM2	F	376	381	Right-handed alpha
Helix 111	AM3	F	381	406	Right-handed alpha
Helix 112	AM4	F	414	431	Right-handed alpha
Helix 113	AM5	F	450	464	Right-handed alpha
Helix 114	AM6	F	470	475	Right-handed 310
Helix 115	AM7	F	479	493	Right-handed alpha
Helix 116	AM8	d	73	90	Right-handed alpha
Helix 117	AM9	d	91	107	Right-handed alpha
Helix 118	AN1	d	108	117	Right-handed alpha
Helix 119	AN2	d	121	137	Right-handed alpha
Helix 120	AN3	d	139	152	Right-handed alpha
Helix 121	AN4	d	153	156	Right-handed 310
Helix 122	AN5	d	157	173	Right-handed alpha
Helix 123	AN6	d	187	203	Right-handed alpha
Helix 124	AN7	d	237	248	Right-handed alpha
Helix 125	AN8	g	44	100	Right-handed alpha
Helix 126	AN9	g	132	152	Right-handed alpha
Helix 127	AO1	g	161	170	Right-handed alpha
Helix 128	AO2	g	187	204	Right-handed alpha
Helix 129	AO3	g	291	362	Right-handed alpha
Helix 130	AO4	e	83	87	Right-handed 310
Helix 131	AO5	e	92	104	Right-handed alpha
Helix 132	AO6	e	110	131	Right-handed alpha

There are 26 sheets in PDB entry 6VOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	53	55	anti-parallel
Strand 3	A	88	91	anti-parallel
Strand 4	A	29	36	anti-parallel
Strand 5	A	39	44	anti-parallel
Strand 6	A	72	76	anti-parallel
Strand 7	A	61	67	anti-parallel
Strand 8	F	20	27	anti-parallel
Strand 9	F	90	92	anti-parallel
Strand 10	F	46	49	anti-parallel
Strand 11	F	61	68	anti-parallel
Strand 12	F	73	78	anti-parallel
Strand 13	F	30	34	anti-parallel
Strand 14	F	20	27	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	126	129	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	193	199	parallel
Strand 3	A	257	262	parallel
Strand 4	A	314	316	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	30	33	anti-parallel
Strand 3	E	74	78	anti-parallel
Strand 4	E	61	68	anti-parallel
Strand 5	B	30	36	anti-parallel
Strand 6	E	45	49	first strand
Strand 7	E	92	97	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	30	33	anti-parallel
Strand 3	E	74	78	anti-parallel
Strand 4	E	61	68	anti-parallel
Strand 5	B	88	91	first strand
Strand 6	B	53	55	anti-parallel
Strand 7	B	62	67	anti-parallel
Strand 8	B	72	75	anti-parallel
Strand 9	B	39	44	anti-parallel
Strand 10	B	30	36	anti-parallel
Strand 11	E	45	49	first strand
Strand 12	E	92	97	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	126	129	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	224	228	parallel
Strand 3	B	193	201	parallel
Strand 4	B	257	261	parallel
Strand 5	B	314	316	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	168	170	parallel
Strand 3	B	344	345	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	231	232	first strand
Strand 2	C	27	36	anti-parallel
Strand 3	C	88	91	anti-parallel
Strand 4	C	53	55	anti-parallel
Strand 5	C	62	67	anti-parallel
Strand 6	C	71	75	anti-parallel
Strand 7	C	39	44	anti-parallel
Strand 8	C	27	36	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	126	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	160	161	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	198	first strand
Strand 2	C	257	262	parallel
Strand 3	C	314	321	parallel
Strand 4	C	167	170	parallel
Strand 5	C	342	345	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	27	first strand
Strand 2	D	30	34	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	60	70	anti-parallel
Strand 5	D	45	50	anti-parallel
Strand 6	D	90	97	anti-parallel
Strand 7	D	21	27	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	129	131	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	162	163	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	271	first strand
Strand 2	D	320	325	parallel
Strand 3	D	167	171	parallel
Strand 4	D	350	351	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	204	first strand
Strand 2	D	235	238	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	129	131	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	238	first strand
Strand 2	E	197	204	parallel
Strand 3	E	269	272	parallel
Strand 4	E	322	328	parallel
Strand 5	E	167	172	parallel
Strand 6	E	348	351	parallel
Strand 7	E	371	372	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	129	131	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	238	first strand
Strand 2	F	197	204	parallel
Strand 3	F	269	273	parallel
Strand 4	F	322	326	parallel
Strand 5	F	167	170	parallel
Strand 6	F	348	350	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	178	179	first strand
Strand 2	d	209	210	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	178	180	first strand
Strand 2	g	156	160	parallel
Strand 3	g	119	123	parallel
Strand 4	g	211	214	parallel
Strand 5	g	226	228	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	253	258	first strand
Strand 2	g	265	270	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	283	284	first strand
Strand 2	e	40	43	parallel
Strand 3	e	65	70	anti-parallel
Strand 4	e	73	78	anti-parallel
Strand 5	e	3	8	parallel
Strand 6	e	18	19	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	24	26	first strand
Strand 2	e	29	31	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VOG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOG