Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VOI entry

There are 9 chains in PDB entry 6VOI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	GLN 506
C	ARG 5	GLN 504
B	ALA 2	LEU 503
D	LYS 17	SER 494
E	GLU 16	LEU 496
F	LYS 17	LEU 496
d	ASP 72	MET 250
g	CYS 41	CYS 363
e	MET 1	THR 131

There are127 helices in PDB entry 6VOI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	25	Right-handed alpha
Helix 2	AA2	A	151	157	Right-handed alpha
Helix 3	AA3	A	175	187	Right-handed alpha
Helix 4	AA4	A	202	217	Right-handed alpha
Helix 5	AA5	A	232	253	Right-handed alpha
Helix 6	AA6	A	263	278	Right-handed alpha
Helix 7	AA7	A	283	287	Right-handed 310
Helix 8	AA8	A	290	300	Right-handed alpha
Helix 9	AA9	A	329	339	Right-handed alpha
Helix 10	AB1	A	346	351	Right-handed alpha
Helix 11	AB2	A	367	372	Right-handed 310
Helix 12	AB3	A	373	380	Right-handed alpha
Helix 13	AB4	A	382	398	Right-handed alpha
Helix 14	AB5	A	404	419	Right-handed alpha
Helix 15	AB6	A	430	443	Right-handed alpha
Helix 16	AB7	A	444	449	Right-handed alpha
Helix 17	AB8	A	453	468	Right-handed alpha
Helix 18	AB9	A	470	479	Right-handed alpha
Helix 19	AC1	A	483	505	Right-handed alpha
Helix 20	AC2	C	7	20	Right-handed alpha
Helix 21	AC3	C	101	105	Right-handed 310
Helix 22	AC4	C	175	187	Right-handed alpha
Helix 23	AC5	C	202	217	Right-handed alpha
Helix 24	AC6	C	218	222	Right-handed 310
Helix 25	AC7	C	232	253	Right-handed alpha
Helix 26	AC8	C	263	278	Right-handed alpha
Helix 27	AC9	C	283	287	Right-handed 310
Helix 28	AD1	C	290	300	Right-handed alpha
Helix 29	AD2	C	329	339	Right-handed alpha
Helix 30	AD3	C	346	352	Right-handed alpha
Helix 31	AD4	C	367	371	Right-handed 310
Helix 32	AD5	C	373	393	Right-handed alpha
Helix 33	AD6	C	404	422	Right-handed alpha
Helix 34	AD7	C	430	443	Right-handed alpha
Helix 35	AD8	C	453	469	Right-handed alpha
Helix 36	AD9	C	470	479	Right-handed alpha
Helix 37	AE1	C	483	503	Right-handed alpha
Helix 38	AE2	B	9	19	Right-handed alpha
Helix 39	AE3	B	151	158	Right-handed alpha
Helix 40	AE4	B	176	186	Right-handed alpha
Helix 41	AE5	B	202	217	Right-handed alpha
Helix 42	AE6	B	218	221	Right-handed 310
Helix 43	AE7	B	232	252	Right-handed alpha
Helix 44	AE8	B	263	277	Right-handed alpha
Helix 45	AE9	B	283	287	Right-handed 310
Helix 46	AF1	B	290	300	Right-handed alpha
Helix 47	AF2	B	306	310	Right-handed 310
Helix 48	AF3	B	329	339	Right-handed alpha
Helix 49	AF4	B	346	353	Right-handed alpha
Helix 50	AF5	B	367	371	Right-handed 310
Helix 51	AF6	B	375	396	Right-handed alpha
Helix 52	AF7	B	410	421	Right-handed alpha
Helix 53	AF8	B	430	443	Right-handed alpha
Helix 54	AF9	B	450	452	Right-handed 310
Helix 55	AG1	B	453	469	Right-handed alpha
Helix 56	AG2	B	469	479	Right-handed alpha
Helix 57	AG3	B	483	503	Right-handed alpha
Helix 58	AG4	D	153	159	Right-handed alpha
Helix 59	AG5	D	179	189	Right-handed alpha
Helix 60	AG6	D	205	219	Right-handed alpha
Helix 61	AG7	D	227	231	Right-handed 310
Helix 62	AG8	D	248	264	Right-handed alpha
Helix 63	AG9	D	274	289	Right-handed alpha
Helix 64	AH1	D	304	311	Right-handed alpha
Helix 65	AH2	D	329	333	Right-handed 310
Helix 66	AH3	D	336	344	Right-handed alpha
Helix 67	AH4	D	353	359	Right-handed alpha
Helix 68	AH5	D	376	401	Right-handed alpha
Helix 69	AH6	D	401	406	Right-handed alpha
Helix 70	AH7	D	409	413	Right-handed 310
Helix 71	AH8	D	414	431	Right-handed alpha
Helix 72	AH9	D	450	463	Right-handed alpha
Helix 73	AI1	D	470	475	Right-handed alpha
Helix 74	AI2	D	479	494	Right-handed alpha
Helix 75	AI3	E	153	159	Right-handed alpha
Helix 76	AI4	E	177	192	Right-handed alpha
Helix 77	AI5	E	205	219	Right-handed alpha
Helix 78	AI6	E	242	265	Right-handed alpha
Helix 79	AI7	E	274	290	Right-handed alpha
Helix 80	AI8	E	301	311	Right-handed alpha
Helix 81	AI9	E	329	333	Right-handed 310
Helix 82	AJ1	E	336	344	Right-handed alpha
Helix 83	AJ2	E	353	360	Right-handed alpha
Helix 84	AJ3	E	376	381	Right-handed alpha
Helix 85	AJ4	E	381	402	Right-handed alpha
Helix 86	AJ5	E	408	413	Right-handed alpha
Helix 87	AJ6	E	417	431	Right-handed alpha
Helix 88	AJ7	E	450	464	Right-handed alpha
Helix 89	AJ8	E	470	474	Right-handed 310
Helix 90	AJ9	E	479	495	Right-handed alpha
Helix 91	AK1	F	153	159	Right-handed alpha
Helix 92	AK2	F	179	193	Right-handed alpha
Helix 93	AK3	F	205	219	Right-handed alpha
Helix 94	AK4	F	226	230	Right-handed 310
Helix 95	AK5	F	242	247	Right-handed alpha
Helix 96	AK6	F	248	263	Right-handed alpha
Helix 97	AK7	F	276	290	Right-handed alpha
Helix 98	AK8	F	301	311	Right-handed alpha
Helix 99	AK9	F	329	333	Right-handed 310
Helix 100	AL1	F	336	341	Right-handed alpha
Helix 101	AL2	F	341	346	Right-handed alpha
Helix 102	AL3	F	354	359	Right-handed alpha
Helix 103	AL4	F	376	381	Right-handed alpha
Helix 104	AL5	F	381	409	Right-handed alpha
Helix 105	AL6	F	410	413	Right-handed 310
Helix 106	AL7	F	416	431	Right-handed alpha
Helix 107	AL8	F	438	443	Right-handed alpha
Helix 108	AL9	F	450	463	Right-handed alpha
Helix 109	AM1	F	470	475	Right-handed 310
Helix 110	AM2	F	479	496	Right-handed alpha
Helix 111	AM3	d	73	89	Right-handed alpha
Helix 112	AM4	d	91	107	Right-handed alpha
Helix 113	AM5	d	108	116	Right-handed alpha
Helix 114	AM6	d	121	137	Right-handed alpha
Helix 115	AM7	d	139	152	Right-handed alpha
Helix 116	AM8	d	154	156	Right-handed 310
Helix 117	AM9	d	157	174	Right-handed alpha
Helix 118	AN1	d	187	203	Right-handed alpha
Helix 119	AN2	d	236	249	Right-handed alpha
Helix 120	AN3	g	43	100	Right-handed alpha
Helix 121	AN4	g	107	111	Right-handed 310
Helix 122	AN5	g	132	151	Right-handed alpha
Helix 123	AN6	g	161	169	Right-handed alpha
Helix 124	AN7	g	187	204	Right-handed alpha
Helix 125	AN8	g	287	362	Right-handed alpha
Helix 126	AN9	e	88	104	Right-handed alpha
Helix 127	AO1	e	107	131	Right-handed alpha

There are 32 sheets in PDB entry 6VOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	39	43	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	90	95	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	341	342	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	194	199	parallel
Strand 3	A	258	262	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	35	first strand
Strand 2	C	39	43	anti-parallel
Strand 3	C	72	76	anti-parallel
Strand 4	C	62	67	anti-parallel
Strand 5	C	54	55	anti-parallel
Strand 6	C	89	91	anti-parallel
Strand 7	C	29	35	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	126	129	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	321	first strand
Strand 2	C	168	170	parallel
Strand 3	C	343	345	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	257	260	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	226	227	parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	67	first strand
Strand 2	B	52	55	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	29	33	anti-parallel
Strand 5	B	41	43	anti-parallel
Strand 6	B	71	76	anti-parallel
Strand 7	B	62	67	anti-parallel
Strand 8	D	21	27	anti-parallel
Strand 9	D	90	97	anti-parallel
Strand 10	D	45	49	anti-parallel
Strand 11	D	61	68	anti-parallel
Strand 12	D	73	78	anti-parallel
Strand 13	D	30	34	anti-parallel
Strand 14	D	21	27	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	128	129	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	224	228	parallel
Strand 3	B	193	201	parallel
Strand 4	B	256	262	parallel
Strand 5	B	313	315	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	364	365	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	129	131	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	27	first strand
Strand 2	E	30	34	anti-parallel
Strand 3	E	73	78	anti-parallel
Strand 4	E	62	68	anti-parallel
Strand 5	E	46	49	anti-parallel
Strand 6	E	91	93	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	130	131	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	E	162	163	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	348	350	parallel
Strand 3	E	371	372	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	200	first strand
Strand 2	E	269	272	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	204	first strand
Strand 2	E	237	238	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	27	first strand
Strand 2	F	30	34	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	60	68	anti-parallel
Strand 5	F	46	50	anti-parallel
Strand 6	F	91	93	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	129	130	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	149	first strand
Strand 2	F	162	163	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	273	first strand
Strand 2	F	322	326	parallel
Strand 3	F	167	172	parallel
Strand 4	F	348	352	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	202	first strand
Strand 2	F	235	237	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	177	178	first strand
Strand 2	d	208	209	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	212	213	first strand
Strand 2	d	180	182	parallel
Strand 3	d	221	223	anti-parallel
Strand 4	d	233	235	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	156	159	first strand
Strand 2	g	119	122	parallel
Strand 3	g	211	214	parallel
Strand 4	g	226	229	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	254	259	first strand
Strand 2	g	264	269	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	12	19	first strand
Strand 2	e	3	9	anti-parallel
Strand 3	e	74	77	parallel
Strand 4	e	67	69	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	21	23	first strand
Strand 2	e	50	52	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	47	48	first strand
Strand 2	e	61	62	anti-parallel
Strand 3	e	81	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VOI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOI