Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VOJ entry

There are 26 chains in PDB entry 6VOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	GLN 504
B	ILE 4	GLN 504
C	THR 3	LEU 503
D	LYS 17	LEU 496
E	LYS 17	SER 494
F	LYS 18	LEU 496
d	VAL 71	GLU 249
e	MET 1	THR 131
g	ALA 42	CYS 363
I	THR 29	ILE 182
J	ASN 87	PRO 220
a	GLY 23	GLU 244
M	PRO 3	VAL 81
N	PRO 3	VAL 81
O	PRO 3	VAL 81
P	PRO 3	VAL 81
Q	PRO 3	VAL 81
R	PRO 3	VAL 81
S	PRO 3	VAL 81
T	PRO 3	VAL 81
U	PRO 3	VAL 81
V	PRO 3	VAL 81
W	PRO 3	VAL 81
X	PRO 3	VAL 81
Y	PRO 3	VAL 81
Z	PRO 3	VAL 81

There are193 helices in PDB entry 6VOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	25	Right-handed alpha
Helix 2	AA2	A	101	105	Right-handed 310
Helix 3	AA3	A	151	158	Right-handed alpha
Helix 4	AA4	A	175	187	Right-handed alpha
Helix 5	AA5	A	204	216	Right-handed alpha
Helix 6	AA6	A	217	221	Right-handed 310
Helix 7	AA7	A	232	253	Right-handed alpha
Helix 8	AA8	A	263	278	Right-handed alpha
Helix 9	AA9	A	283	287	Right-handed 310
Helix 10	AB1	A	290	300	Right-handed alpha
Helix 11	AB2	A	329	339	Right-handed alpha
Helix 12	AB3	A	346	351	Right-handed alpha
Helix 13	AB4	A	367	372	Right-handed 310
Helix 14	AB5	A	373	393	Right-handed alpha
Helix 15	AB6	A	397	401	Right-handed 310
Helix 16	AB7	A	404	422	Right-handed alpha
Helix 17	AB8	A	430	443	Right-handed alpha
Helix 18	AB9	A	453	469	Right-handed alpha
Helix 19	AC1	A	470	480	Right-handed alpha
Helix 20	AC2	A	483	503	Right-handed alpha
Helix 21	AC3	B	11	19	Right-handed alpha
Helix 22	AC4	B	151	157	Right-handed alpha
Helix 23	AC5	B	175	186	Right-handed alpha
Helix 24	AC6	B	202	217	Right-handed alpha
Helix 25	AC7	B	232	253	Right-handed alpha
Helix 26	AC8	B	264	278	Right-handed alpha
Helix 27	AC9	B	283	287	Right-handed 310
Helix 28	AD1	B	288	289	Right-handed 310
Helix 29	AD2	B	290	300	Right-handed alpha
Helix 30	AD3	B	306	310	Right-handed 310
Helix 31	AD4	B	329	339	Right-handed alpha
Helix 32	AD5	B	346	351	Right-handed alpha
Helix 33	AD6	B	367	372	Right-handed 310
Helix 34	AD7	B	373	380	Right-handed alpha
Helix 35	AD8	B	382	397	Right-handed alpha
Helix 36	AD9	B	404	420	Right-handed alpha
Helix 37	AE1	B	430	443	Right-handed alpha
Helix 38	AE2	B	452	469	Right-handed alpha
Helix 39	AE3	B	469	479	Right-handed alpha
Helix 40	AE4	B	483	504	Right-handed alpha
Helix 41	AE5	C	5	16	Right-handed alpha
Helix 42	AE6	C	101	105	Right-handed 310
Helix 43	AE7	C	136	138	Right-handed 310
Helix 44	AE8	C	151	158	Right-handed alpha
Helix 45	AE9	C	175	186	Right-handed alpha
Helix 46	AF1	C	202	216	Right-handed alpha
Helix 47	AF2	C	218	220	Right-handed 310
Helix 48	AF3	C	232	253	Right-handed alpha
Helix 49	AF4	C	263	278	Right-handed alpha
Helix 50	AF5	C	283	287	Right-handed 310
Helix 51	AF6	C	288	289	Right-handed 310
Helix 52	AF7	C	290	300	Right-handed alpha
Helix 53	AF8	C	323	326	Right-handed 310
Helix 54	AF9	C	329	339	Right-handed alpha
Helix 55	AG1	C	346	351	Right-handed alpha
Helix 56	AG2	C	373	395	Right-handed alpha
Helix 57	AG3	C	404	413	Right-handed alpha
Helix 58	AG4	C	414	421	Right-handed alpha
Helix 59	AG5	C	430	444	Right-handed alpha
Helix 60	AG6	C	453	468	Right-handed alpha
Helix 61	AG7	C	470	480	Right-handed alpha
Helix 62	AG8	C	483	503	Right-handed alpha
Helix 63	AG9	D	138	142	Right-handed 310
Helix 64	AH1	D	153	158	Right-handed alpha
Helix 65	AH2	D	177	190	Right-handed alpha
Helix 66	AH3	D	205	219	Right-handed alpha
Helix 67	AH4	D	242	263	Right-handed alpha
Helix 68	AH5	D	274	289	Right-handed alpha
Helix 69	AH6	D	302	311	Right-handed alpha
Helix 70	AH7	D	330	333	Right-handed 310
Helix 71	AH8	D	336	343	Right-handed alpha
Helix 72	AH9	D	344	346	Right-handed 310
Helix 73	AI1	D	353	360	Right-handed alpha
Helix 74	AI2	D	376	381	Right-handed alpha
Helix 75	AI3	D	381	406	Right-handed alpha
Helix 76	AI4	D	414	431	Right-handed alpha
Helix 77	AI5	D	438	443	Right-handed alpha
Helix 78	AI6	D	450	463	Right-handed alpha
Helix 79	AI7	D	470	475	Right-handed 310
Helix 80	AI8	D	479	496	Right-handed alpha
Helix 81	AI9	E	138	142	Right-handed 310
Helix 82	AJ1	E	153	158	Right-handed alpha
Helix 83	AJ2	E	177	190	Right-handed alpha
Helix 84	AJ3	E	205	220	Right-handed alpha
Helix 85	AJ4	E	227	231	Right-handed 310
Helix 86	AJ5	E	242	265	Right-handed alpha
Helix 87	AJ6	E	275	287	Right-handed alpha
Helix 88	AJ7	E	302	311	Right-handed alpha
Helix 89	AJ8	E	312	314	Right-handed 310
Helix 90	AJ9	E	330	333	Right-handed 310
Helix 91	AK1	E	336	344	Right-handed alpha
Helix 92	AK2	E	353	359	Right-handed alpha
Helix 93	AK3	E	376	408	Right-handed alpha
Helix 94	AK4	E	414	431	Right-handed alpha
Helix 95	AK5	E	437	441	Right-handed 310
Helix 96	AK6	E	450	464	Right-handed alpha
Helix 97	AK7	E	470	474	Right-handed 310
Helix 98	AK8	E	479	491	Right-handed alpha
Helix 99	AK9	F	154	159	Right-handed alpha
Helix 100	AL1	F	177	193	Right-handed alpha
Helix 101	AL2	F	205	219	Right-handed alpha
Helix 102	AL3	F	244	264	Right-handed alpha
Helix 103	AL4	F	274	290	Right-handed alpha
Helix 104	AL5	F	301	311	Right-handed alpha
Helix 105	AL6	F	329	333	Right-handed 310
Helix 106	AL7	F	336	344	Right-handed alpha
Helix 107	AL8	F	353	360	Right-handed alpha
Helix 108	AL9	F	376	381	Right-handed alpha
Helix 109	AM1	F	381	401	Right-handed alpha
Helix 110	AM2	F	415	432	Right-handed alpha
Helix 111	AM3	F	438	443	Right-handed alpha
Helix 112	AM4	F	450	463	Right-handed alpha
Helix 113	AM5	F	470	474	Right-handed 310
Helix 114	AM6	F	479	495	Right-handed alpha
Helix 115	AM7	d	75	90	Right-handed alpha
Helix 116	AM8	d	91	106	Right-handed alpha
Helix 117	AM9	d	108	117	Right-handed alpha
Helix 118	AN1	d	121	137	Right-handed alpha
Helix 119	AN2	d	139	152	Right-handed alpha
Helix 120	AN3	d	154	156	Right-handed 310
Helix 121	AN4	d	157	173	Right-handed alpha
Helix 122	AN5	d	187	203	Right-handed alpha
Helix 123	AN6	d	237	247	Right-handed alpha
Helix 124	AN7	e	88	103	Right-handed alpha
Helix 125	AN8	e	104	106	Right-handed 310
Helix 126	AN9	e	108	131	Right-handed alpha
Helix 127	AO1	g	43	81	Right-handed alpha
Helix 128	AO2	g	82	96	Right-handed alpha
Helix 129	AO3	g	97	100	Right-handed 310
Helix 130	AO4	g	131	148	Right-handed alpha
Helix 131	AO5	g	161	170	Right-handed alpha
Helix 132	AO6	g	188	204	Right-handed alpha
Helix 133	AO7	g	246	251	Right-handed 310
Helix 134	AO8	g	287	363	Right-handed alpha
Helix 135	AO9	I	31	158	Right-handed alpha
Helix 136	AP1	I	164	180	Right-handed alpha
Helix 137	AP2	J	88	202	Right-handed alpha
Helix 138	AP3	J	203	219	Right-handed alpha
Helix 139	AP4	a	37	59	Right-handed alpha
Helix 140	AP5	a	69	87	Right-handed alpha
Helix 141	AP6	a	91	93	Right-handed 310
Helix 142	AP7	a	94	115	Right-handed alpha
Helix 143	AP8	a	133	155	Right-handed alpha
Helix 144	AP9	a	168	170	Right-handed 310
Helix 145	AQ1	a	171	207	Right-handed alpha
Helix 146	AQ2	a	213	244	Right-handed alpha
Helix 147	AQ3	M	4	20	Right-handed alpha
Helix 148	AQ4	M	21	42	Right-handed alpha
Helix 149	AQ5	M	45	76	Right-handed alpha
Helix 150	AQ6	N	4	21	Right-handed alpha
Helix 151	AQ7	N	22	42	Right-handed alpha
Helix 152	AQ8	N	45	76	Right-handed alpha
Helix 153	AQ9	O	4	20	Right-handed alpha
Helix 154	AR1	O	21	42	Right-handed alpha
Helix 155	AR2	O	45	76	Right-handed alpha
Helix 156	AR3	P	4	21	Right-handed alpha
Helix 157	AR4	P	22	42	Right-handed alpha
Helix 158	AR5	P	45	76	Right-handed alpha
Helix 159	AR6	Q	4	20	Right-handed alpha
Helix 160	AR7	Q	21	42	Right-handed alpha
Helix 161	AR8	Q	45	76	Right-handed alpha
Helix 162	AR9	R	4	19	Right-handed alpha
Helix 163	AS1	R	21	42	Right-handed alpha
Helix 164	AS2	R	45	76	Right-handed alpha
Helix 165	AS3	S	4	20	Right-handed alpha
Helix 166	AS4	S	22	42	Right-handed alpha
Helix 167	AS5	S	45	76	Right-handed alpha
Helix 168	AS6	T	4	20	Right-handed alpha
Helix 169	AS7	T	21	42	Right-handed alpha
Helix 170	AS8	T	46	76	Right-handed alpha
Helix 171	AS9	U	4	21	Right-handed alpha
Helix 172	AT1	U	21	42	Right-handed alpha
Helix 173	AT2	U	45	76	Right-handed alpha
Helix 174	AT3	V	4	21	Right-handed alpha
Helix 175	AT4	V	21	42	Right-handed alpha
Helix 176	AT5	V	45	76	Right-handed alpha
Helix 177	AT6	W	4	20	Right-handed alpha
Helix 178	AT7	W	21	37	Right-handed alpha
Helix 179	AT8	W	37	42	Right-handed alpha
Helix 180	AT9	W	45	76	Right-handed alpha
Helix 181	AU1	X	4	20	Right-handed alpha
Helix 182	AU2	X	21	40	Right-handed alpha
Helix 183	AU3	X	42	44	Right-handed 310
Helix 184	AU4	X	45	76	Right-handed alpha
Helix 185	AU5	Y	4	21	Right-handed alpha
Helix 186	AU6	Y	22	38	Right-handed alpha
Helix 187	AU7	Y	39	41	Right-handed 310
Helix 188	AU8	Y	45	76	Right-handed alpha
Helix 189	AU9	Z	4	21	Right-handed alpha
Helix 190	AV1	Z	21	38	Right-handed alpha
Helix 191	AV2	Z	39	42	Right-handed 310
Helix 192	AV3	Z	43	44	Right-handed 310
Helix 193	AV4	Z	45	76	Right-handed alpha

There are 32 sheets in PDB entry 6VOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	39	44	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	61	67	anti-parallel
Strand 5	F	20	27	anti-parallel
Strand 6	A	53	56	first strand
Strand 7	A	89	91	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	39	44	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	61	67	anti-parallel
Strand 5	F	90	93	first strand
Strand 6	F	46	50	anti-parallel
Strand 7	F	60	67	anti-parallel
Strand 8	F	73	78	anti-parallel
Strand 9	F	30	34	anti-parallel
Strand 10	F	20	27	anti-parallel
Strand 11	A	53	56	first strand
Strand 12	A	89	91	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	126	128	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	166	170	parallel
Strand 3	A	341	344	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	228	first strand
Strand 2	A	193	201	parallel
Strand 3	A	257	262	parallel
Strand 4	A	314	316	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	67	anti-parallel
Strand 3	D	21	27	anti-parallel
Strand 4	B	71	76	first strand
Strand 5	B	39	44	anti-parallel
Strand 6	B	30	35	anti-parallel
Strand 7	B	88	89	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	67	anti-parallel
Strand 3	D	90	93	first strand
Strand 4	D	46	52	anti-parallel
Strand 5	D	58	70	anti-parallel
Strand 6	D	73	78	anti-parallel
Strand 7	D	30	34	anti-parallel
Strand 8	D	21	27	anti-parallel
Strand 9	B	71	76	first strand
Strand 10	B	39	44	anti-parallel
Strand 11	B	30	35	anti-parallel
Strand 12	B	88	89	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	127	129	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	224	225	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	167	170	parallel
Strand 3	B	342	343	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	198	first strand
Strand 2	B	257	262	parallel
Strand 3	B	314	316	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	d	231	234	anti-parallel
Strand 3	d	222	225	anti-parallel
Strand 4	d	175	182	anti-parallel
Strand 5	d	206	213	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	72	76	anti-parallel
Strand 3	C	62	67	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	89	91	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	127	129	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	222	228	parallel
Strand 3	C	192	201	parallel
Strand 4	C	256	262	parallel
Strand 5	C	313	316	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	304	305	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	321	first strand
Strand 2	C	166	170	parallel
Strand 3	C	341	345	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	129	130	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	232	237	parallel
Strand 3	D	196	202	parallel
Strand 4	D	268	273	parallel
Strand 5	D	321	328	parallel
Strand 6	D	167	172	parallel
Strand 7	D	350	351	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	27	first strand
Strand 2	E	30	34	anti-parallel
Strand 3	E	73	78	anti-parallel
Strand 4	E	62	68	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	90	97	anti-parallel
Strand 7	E	20	27	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	129	131	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	234	237	parallel
Strand 3	E	197	202	parallel
Strand 4	E	267	273	parallel
Strand 5	E	320	328	parallel
Strand 6	E	167	172	parallel
Strand 7	E	351	352	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	E	162	163	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	129	131	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	232	236	parallel
Strand 3	F	195	201	parallel
Strand 4	F	267	272	parallel
Strand 5	F	320	326	parallel
Strand 6	F	167	170	parallel
Strand 7	F	348	350	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	149	first strand
Strand 2	F	162	163	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	3	4	first strand
Strand 2	e	18	19	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	13	15	first strand
Strand 2	e	7	8	anti-parallel
Strand 3	e	74	78	parallel
Strand 4	e	65	69	anti-parallel
Strand 5	e	41	42	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	30	31	first strand
Strand 2	e	21	25	anti-parallel
Strand 3	e	49	52	anti-parallel
Strand 4	e	58	62	anti-parallel
Strand 5	e	81	83	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	176	179	first strand
Strand 2	g	156	159	parallel
Strand 3	g	119	122	parallel
Strand 4	g	210	214	parallel
Strand 5	g	226	229	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	28	30	first strand
Strand 2	a	34	36	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOJ