Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VOK entry

There are 9 chains in PDB entry 6VOK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	GLN 504
B	ILE 4	GLN 504
C	THR 3	LEU 503
D	LYS 17	LEU 496
E	LYS 17	SER 494
F	LYS 18	LEU 496
d	VAL 71	GLU 249
e	MET 1	THR 131
g	ALA 42	CYS 363

There are128 helices in PDB entry 6VOK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	25	Right-handed alpha
Helix 2	AA2	A	57	59	Right-handed 310
Helix 3	AA3	A	151	157	Right-handed alpha
Helix 4	AA4	A	175	187	Right-handed alpha
Helix 5	AA5	A	204	216	Right-handed alpha
Helix 6	AA6	A	217	221	Right-handed 310
Helix 7	AA7	A	232	253	Right-handed alpha
Helix 8	AA8	A	263	278	Right-handed alpha
Helix 9	AA9	A	283	287	Right-handed 310
Helix 10	AB1	A	290	300	Right-handed alpha
Helix 11	AB2	A	329	339	Right-handed alpha
Helix 12	AB3	A	346	351	Right-handed alpha
Helix 13	AB4	A	367	372	Right-handed 310
Helix 14	AB5	A	373	392	Right-handed alpha
Helix 15	AB6	A	404	422	Right-handed alpha
Helix 16	AB7	A	430	443	Right-handed alpha
Helix 17	AB8	A	453	468	Right-handed alpha
Helix 18	AB9	A	470	480	Right-handed alpha
Helix 19	AC1	A	483	504	Right-handed alpha
Helix 20	AC2	B	11	19	Right-handed alpha
Helix 21	AC3	B	151	158	Right-handed alpha
Helix 22	AC4	B	175	186	Right-handed alpha
Helix 23	AC5	B	202	217	Right-handed alpha
Helix 24	AC6	B	232	253	Right-handed alpha
Helix 25	AC7	B	264	278	Right-handed alpha
Helix 26	AC8	B	283	287	Right-handed 310
Helix 27	AC9	B	288	289	Right-handed 310
Helix 28	AD1	B	290	300	Right-handed alpha
Helix 29	AD2	B	329	339	Right-handed alpha
Helix 30	AD3	B	346	352	Right-handed alpha
Helix 31	AD4	B	367	372	Right-handed 310
Helix 32	AD5	B	373	380	Right-handed alpha
Helix 33	AD6	B	382	397	Right-handed alpha
Helix 34	AD7	B	404	420	Right-handed alpha
Helix 35	AD8	B	430	443	Right-handed alpha
Helix 36	AD9	B	452	469	Right-handed alpha
Helix 37	AE1	B	469	479	Right-handed alpha
Helix 38	AE2	B	483	503	Right-handed alpha
Helix 39	AE3	C	5	16	Right-handed alpha
Helix 40	AE4	C	101	105	Right-handed 310
Helix 41	AE5	C	151	158	Right-handed alpha
Helix 42	AE6	C	175	187	Right-handed alpha
Helix 43	AE7	C	202	216	Right-handed alpha
Helix 44	AE8	C	218	222	Right-handed 310
Helix 45	AE9	C	232	253	Right-handed alpha
Helix 46	AF1	C	263	278	Right-handed alpha
Helix 47	AF2	C	283	287	Right-handed 310
Helix 48	AF3	C	288	289	Right-handed 310
Helix 49	AF4	C	290	300	Right-handed alpha
Helix 50	AF5	C	329	339	Right-handed alpha
Helix 51	AF6	C	346	353	Right-handed alpha
Helix 52	AF7	C	373	395	Right-handed alpha
Helix 53	AF8	C	404	413	Right-handed alpha
Helix 54	AF9	C	414	422	Right-handed alpha
Helix 55	AG1	C	430	444	Right-handed alpha
Helix 56	AG2	C	453	468	Right-handed alpha
Helix 57	AG3	C	471	480	Right-handed alpha
Helix 58	AG4	C	483	503	Right-handed alpha
Helix 59	AG5	D	138	142	Right-handed 310
Helix 60	AG6	D	153	159	Right-handed alpha
Helix 61	AG7	D	177	190	Right-handed alpha
Helix 62	AG8	D	191	193	Right-handed 310
Helix 63	AG9	D	205	218	Right-handed alpha
Helix 64	AH1	D	242	263	Right-handed alpha
Helix 65	AH2	D	274	287	Right-handed alpha
Helix 66	AH3	D	302	311	Right-handed alpha
Helix 67	AH4	D	330	333	Right-handed 310
Helix 68	AH5	D	336	343	Right-handed alpha
Helix 69	AH6	D	354	359	Right-handed alpha
Helix 70	AH7	D	376	381	Right-handed alpha
Helix 71	AH8	D	381	406	Right-handed alpha
Helix 72	AH9	D	414	431	Right-handed alpha
Helix 73	AI1	D	438	443	Right-handed alpha
Helix 74	AI2	D	450	464	Right-handed alpha
Helix 75	AI3	D	479	496	Right-handed alpha
Helix 76	AI4	E	138	142	Right-handed 310
Helix 77	AI5	E	153	159	Right-handed alpha
Helix 78	AI6	E	177	190	Right-handed alpha
Helix 79	AI7	E	205	220	Right-handed alpha
Helix 80	AI8	E	242	264	Right-handed alpha
Helix 81	AI9	E	275	286	Right-handed alpha
Helix 82	AJ1	E	302	311	Right-handed alpha
Helix 83	AJ2	E	312	314	Right-handed 310
Helix 84	AJ3	E	330	333	Right-handed 310
Helix 85	AJ4	E	336	343	Right-handed alpha
Helix 86	AJ5	E	344	346	Right-handed 310
Helix 87	AJ6	E	354	359	Right-handed alpha
Helix 88	AJ7	E	376	408	Right-handed alpha
Helix 89	AJ8	E	414	431	Right-handed alpha
Helix 90	AJ9	E	438	443	Right-handed alpha
Helix 91	AK1	E	450	464	Right-handed alpha
Helix 92	AK2	E	479	490	Right-handed alpha
Helix 93	AK3	F	154	159	Right-handed alpha
Helix 94	AK4	F	177	193	Right-handed alpha
Helix 95	AK5	F	205	219	Right-handed alpha
Helix 96	AK6	F	244	265	Right-handed alpha
Helix 97	AK7	F	274	289	Right-handed alpha
Helix 98	AK8	F	301	311	Right-handed alpha
Helix 99	AK9	F	329	333	Right-handed 310
Helix 100	AL1	F	336	343	Right-handed alpha
Helix 101	AL2	F	354	360	Right-handed alpha
Helix 102	AL3	F	376	381	Right-handed alpha
Helix 103	AL4	F	381	405	Right-handed alpha
Helix 104	AL5	F	414	431	Right-handed alpha
Helix 105	AL6	F	435	437	Right-handed 310
Helix 106	AL7	F	438	443	Right-handed alpha
Helix 107	AL8	F	450	463	Right-handed alpha
Helix 108	AL9	F	470	474	Right-handed 310
Helix 109	AM1	F	480	495	Right-handed alpha
Helix 110	AM2	d	75	90	Right-handed alpha
Helix 111	AM3	d	91	107	Right-handed alpha
Helix 112	AM4	d	108	117	Right-handed alpha
Helix 113	AM5	d	121	137	Right-handed alpha
Helix 114	AM6	d	139	152	Right-handed alpha
Helix 115	AM7	d	154	156	Right-handed 310
Helix 116	AM8	d	157	174	Right-handed alpha
Helix 117	AM9	d	187	203	Right-handed alpha
Helix 118	AN1	d	237	249	Right-handed alpha
Helix 119	AN2	e	88	104	Right-handed alpha
Helix 120	AN3	e	108	113	Right-handed alpha
Helix 121	AN4	e	115	130	Right-handed alpha
Helix 122	AN5	g	43	81	Right-handed alpha
Helix 123	AN6	g	82	96	Right-handed alpha
Helix 124	AN7	g	131	151	Right-handed alpha
Helix 125	AN8	g	161	170	Right-handed alpha
Helix 126	AN9	g	188	204	Right-handed alpha
Helix 127	AO1	g	247	251	Right-handed 310
Helix 128	AO2	g	287	363	Right-handed alpha

There are 28 sheets in PDB entry 6VOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	46	52	anti-parallel
Strand 3	F	58	67	anti-parallel
Strand 4	F	73	78	anti-parallel
Strand 5	F	30	34	anti-parallel
Strand 6	F	23	27	anti-parallel
Strand 7	A	61	67	anti-parallel
Strand 8	A	71	76	anti-parallel
Strand 9	A	39	44	anti-parallel
Strand 10	A	29	32	anti-parallel
Strand 11	A	88	91	anti-parallel
Strand 12	A	53	55	anti-parallel
Strand 13	A	61	67	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	126	129	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	166	170	parallel
Strand 3	A	341	345	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	195	199	parallel
Strand 3	A	260	262	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	67	anti-parallel
Strand 3	D	21	27	anti-parallel
Strand 4	B	71	76	first strand
Strand 5	B	39	44	anti-parallel
Strand 6	B	30	35	anti-parallel
Strand 7	B	88	89	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	67	anti-parallel
Strand 3	D	90	93	first strand
Strand 4	D	46	52	anti-parallel
Strand 5	D	58	70	anti-parallel
Strand 6	D	73	78	anti-parallel
Strand 7	D	30	34	anti-parallel
Strand 8	D	21	27	anti-parallel
Strand 9	B	71	76	first strand
Strand 10	B	39	44	anti-parallel
Strand 11	B	30	35	anti-parallel
Strand 12	B	88	89	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	127	129	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	224	227	parallel
Strand 3	B	193	199	parallel
Strand 4	B	257	262	parallel
Strand 5	B	314	316	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	167	170	parallel
Strand 3	B	342	344	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	d	231	234	anti-parallel
Strand 3	d	222	225	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	36	first strand
Strand 2	C	39	42	anti-parallel
Strand 3	C	72	76	anti-parallel
Strand 4	C	61	67	anti-parallel
Strand 5	C	52	56	anti-parallel
Strand 6	C	89	95	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	126	129	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	224	228	parallel
Strand 3	C	192	201	parallel
Strand 4	C	256	262	parallel
Strand 5	C	313	316	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	321	first strand
Strand 2	C	166	170	parallel
Strand 3	C	341	342	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	129	131	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	232	236	parallel
Strand 3	D	197	201	parallel
Strand 4	D	268	273	parallel
Strand 5	D	321	328	parallel
Strand 6	D	167	172	parallel
Strand 7	D	348	351	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	27	first strand
Strand 2	E	30	34	anti-parallel
Strand 3	E	73	78	anti-parallel
Strand 4	E	62	70	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	90	97	anti-parallel
Strand 7	E	20	27	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	129	131	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	232	237	parallel
Strand 3	E	197	202	parallel
Strand 4	E	267	273	parallel
Strand 5	E	320	328	parallel
Strand 6	E	168	172	parallel
Strand 7	E	348	350	parallel
Strand 8	E	371	372	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	129	131	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	232	238	parallel
Strand 3	F	195	204	parallel
Strand 4	F	267	272	parallel
Strand 5	F	320	326	parallel
Strand 6	F	167	170	parallel
Strand 7	F	348	350	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	175	182	first strand
Strand 2	d	206	213	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	13	15	first strand
Strand 2	e	4	8	anti-parallel
Strand 3	e	73	77	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	30	33	first strand
Strand 2	e	21	25	anti-parallel
Strand 3	e	49	52	anti-parallel
Strand 4	e	58	63	anti-parallel
Strand 5	e	46	47	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	30	33	first strand
Strand 2	e	21	25	anti-parallel
Strand 3	e	49	52	anti-parallel
Strand 4	e	58	63	anti-parallel
Strand 5	e	81	83	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	41	42	first strand
Strand 2	e	67	68	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	176	179	first strand
Strand 2	g	157	159	parallel
Strand 3	g	118	122	parallel
Strand 4	g	209	214	parallel
Strand 5	g	226	229	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	258	259	first strand
Strand 2	g	264	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VOK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOK