Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VOL entry

There are 26 chains in PDB entry 6VOL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	LEU 503
B	ILE 4	GLN 504
C	ARG 5	GLN 504
D	LYS 18	LEU 496
E	LYS 17	LEU 496
F	LYS 17	SER 494
d	VAL 71	GLU 249
g	ASN 43	CYS 363
e	MET 1	THR 131
I	ASN 33	ILE 182
J	LEU 88	PRO 220
a	ILE 35	GLU 244
M	PRO 3	VAL 81
N	PRO 3	VAL 81
O	PRO 3	VAL 81
P	PRO 3	VAL 81
Q	PRO 3	VAL 81
R	PRO 3	VAL 81
S	PRO 3	VAL 81
T	PRO 3	VAL 81
U	PRO 3	VAL 81
V	PRO 3	VAL 81
W	PRO 3	VAL 81
X	PRO 3	VAL 81
Y	PRO 3	VAL 81
Z	PRO 3	VAL 81

There are185 helices in PDB entry 6VOL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	25	Right-handed alpha
Helix 2	AA2	A	101	105	Right-handed 310
Helix 3	AA3	A	151	158	Right-handed alpha
Helix 4	AA4	A	175	187	Right-handed alpha
Helix 5	AA5	A	202	217	Right-handed alpha
Helix 6	AA6	A	218	221	Right-handed 310
Helix 7	AA7	A	232	253	Right-handed alpha
Helix 8	AA8	A	264	277	Right-handed alpha
Helix 9	AA9	A	290	300	Right-handed alpha
Helix 10	AB1	A	329	337	Right-handed alpha
Helix 11	AB2	A	346	353	Right-handed alpha
Helix 12	AB3	A	367	372	Right-handed alpha
Helix 13	AB4	A	373	395	Right-handed alpha
Helix 14	AB5	A	396	401	Right-handed alpha
Helix 15	AB6	A	406	422	Right-handed alpha
Helix 16	AB7	A	430	443	Right-handed alpha
Helix 17	AB8	A	450	468	Right-handed alpha
Helix 18	AB9	A	470	479	Right-handed alpha
Helix 19	AC1	A	483	501	Right-handed alpha
Helix 20	AC2	B	11	19	Right-handed alpha
Helix 21	AC3	B	57	59	Right-handed 310
Helix 22	AC4	B	101	105	Right-handed 310
Helix 23	AC5	B	151	158	Right-handed alpha
Helix 24	AC6	B	175	187	Right-handed alpha
Helix 25	AC7	B	202	217	Right-handed alpha
Helix 26	AC8	B	218	220	Right-handed 310
Helix 27	AC9	B	232	253	Right-handed alpha
Helix 28	AD1	B	264	278	Right-handed alpha
Helix 29	AD2	B	283	287	Right-handed 310
Helix 30	AD3	B	288	289	Right-handed 310
Helix 31	AD4	B	290	301	Right-handed alpha
Helix 32	AD5	B	329	339	Right-handed alpha
Helix 33	AD6	B	346	352	Right-handed alpha
Helix 34	AD7	B	367	371	Right-handed 310
Helix 35	AD8	B	373	394	Right-handed alpha
Helix 36	AD9	B	395	397	Right-handed 310
Helix 37	AE1	B	399	403	Right-handed 310
Helix 38	AE2	B	404	421	Right-handed alpha
Helix 39	AE3	B	430	444	Right-handed alpha
Helix 40	AE4	B	453	469	Right-handed alpha
Helix 41	AE5	B	470	480	Right-handed alpha
Helix 42	AE6	B	483	504	Right-handed alpha
Helix 43	AE7	C	6	20	Right-handed alpha
Helix 44	AE8	C	101	105	Right-handed 310
Helix 45	AE9	C	151	157	Right-handed alpha
Helix 46	AF1	C	175	186	Right-handed alpha
Helix 47	AF2	C	187	190	Right-handed 310
Helix 48	AF3	C	202	217	Right-handed alpha
Helix 49	AF4	C	232	253	Right-handed alpha
Helix 50	AF5	C	263	278	Right-handed alpha
Helix 51	AF6	C	283	287	Right-handed 310
Helix 52	AF7	C	288	289	Right-handed 310
Helix 53	AF8	C	290	300	Right-handed alpha
Helix 54	AF9	C	306	310	Right-handed 310
Helix 55	AG1	C	322	326	Right-handed 310
Helix 56	AG2	C	329	339	Right-handed alpha
Helix 57	AG3	C	346	352	Right-handed alpha
Helix 58	AG4	C	359	363	Right-handed 310
Helix 59	AG5	C	367	372	Right-handed 310
Helix 60	AG6	C	373	381	Right-handed alpha
Helix 61	AG7	C	382	397	Right-handed alpha
Helix 62	AG8	C	404	421	Right-handed alpha
Helix 63	AG9	C	430	443	Right-handed alpha
Helix 64	AH1	C	453	469	Right-handed alpha
Helix 65	AH2	C	469	479	Right-handed alpha
Helix 66	AH3	C	483	504	Right-handed alpha
Helix 67	AH4	D	103	107	Right-handed 310
Helix 68	AH5	D	138	142	Right-handed 310
Helix 69	AH6	D	153	159	Right-handed alpha
Helix 70	AH7	D	177	192	Right-handed alpha
Helix 71	AH8	D	205	219	Right-handed alpha
Helix 72	AH9	D	242	263	Right-handed alpha
Helix 73	AI1	D	274	290	Right-handed alpha
Helix 74	AI2	D	301	311	Right-handed alpha
Helix 75	AI3	D	329	333	Right-handed 310
Helix 76	AI4	D	336	344	Right-handed alpha
Helix 77	AI5	D	353	359	Right-handed alpha
Helix 78	AI6	D	376	381	Right-handed alpha
Helix 79	AI7	D	381	402	Right-handed alpha
Helix 80	AI8	D	403	409	Right-handed alpha
Helix 81	AI9	D	414	431	Right-handed alpha
Helix 82	AJ1	D	438	443	Right-handed alpha
Helix 83	AJ2	D	450	463	Right-handed alpha
Helix 84	AJ3	D	470	475	Right-handed 310
Helix 85	AJ4	D	479	496	Right-handed alpha
Helix 86	AJ5	E	103	107	Right-handed 310
Helix 87	AJ6	E	153	160	Right-handed alpha
Helix 88	AJ7	E	177	193	Right-handed alpha
Helix 89	AJ8	E	205	219	Right-handed alpha
Helix 90	AJ9	E	242	264	Right-handed alpha
Helix 91	AK1	E	275	290	Right-handed alpha
Helix 92	AK2	E	302	311	Right-handed alpha
Helix 93	AK3	E	330	333	Right-handed 310
Helix 94	AK4	E	336	346	Right-handed alpha
Helix 95	AK5	E	353	359	Right-handed alpha
Helix 96	AK6	E	376	381	Right-handed alpha
Helix 97	AK7	E	381	409	Right-handed alpha
Helix 98	AK8	E	414	431	Right-handed alpha
Helix 99	AK9	E	438	443	Right-handed alpha
Helix 100	AL1	E	450	464	Right-handed alpha
Helix 101	AL2	E	470	475	Right-handed 310
Helix 102	AL3	E	479	496	Right-handed alpha
Helix 103	AL4	F	103	107	Right-handed 310
Helix 104	AL5	F	153	160	Right-handed alpha
Helix 105	AL6	F	177	193	Right-handed alpha
Helix 106	AL7	F	205	219	Right-handed alpha
Helix 107	AL8	F	248	265	Right-handed alpha
Helix 108	AL9	F	274	290	Right-handed alpha
Helix 109	AM1	F	301	311	Right-handed alpha
Helix 110	AM2	F	330	333	Right-handed 310
Helix 111	AM3	F	336	343	Right-handed alpha
Helix 112	AM4	F	353	360	Right-handed alpha
Helix 113	AM5	F	376	381	Right-handed alpha
Helix 114	AM6	F	381	408	Right-handed alpha
Helix 115	AM7	F	409	413	Right-handed 310
Helix 116	AM8	F	414	431	Right-handed alpha
Helix 117	AM9	F	450	464	Right-handed alpha
Helix 118	AN1	F	465	469	Right-handed 310
Helix 119	AN2	F	471	475	Right-handed 310
Helix 120	AN3	F	479	493	Right-handed alpha
Helix 121	AN4	d	73	90	Right-handed alpha
Helix 122	AN5	d	91	108	Right-handed alpha
Helix 123	AN6	d	108	117	Right-handed alpha
Helix 124	AN7	d	121	137	Right-handed alpha
Helix 125	AN8	d	139	153	Right-handed alpha
Helix 126	AN9	d	154	156	Right-handed 310
Helix 127	AO1	d	157	174	Right-handed alpha
Helix 128	AO2	d	187	203	Right-handed alpha
Helix 129	AO3	d	237	248	Right-handed alpha
Helix 130	AO4	g	44	100	Right-handed alpha
Helix 131	AO5	g	132	152	Right-handed alpha
Helix 132	AO6	g	162	171	Right-handed alpha
Helix 133	AO7	g	188	204	Right-handed alpha
Helix 134	AO8	g	241	245	Right-handed 310
Helix 135	AO9	g	287	363	Right-handed alpha
Helix 136	AP1	e	85	87	Right-handed 310
Helix 137	AP2	e	88	106	Right-handed alpha
Helix 138	AP3	e	108	130	Right-handed alpha
Helix 139	AP4	I	34	157	Right-handed alpha
Helix 140	AP5	I	158	182	Right-handed alpha
Helix 141	AP6	J	89	110	Right-handed alpha
Helix 142	AP7	J	110	213	Right-handed alpha
Helix 143	AP8	a	36	60	Right-handed alpha
Helix 144	AP9	a	68	87	Right-handed alpha
Helix 145	AQ1	a	91	93	Right-handed 310
Helix 146	AQ2	a	94	114	Right-handed alpha
Helix 147	AQ3	a	129	132	Right-handed 310
Helix 148	AQ4	a	133	155	Right-handed alpha
Helix 149	AQ5	a	171	208	Right-handed alpha
Helix 150	AQ6	a	213	244	Right-handed alpha
Helix 151	AQ7	M	4	21	Right-handed alpha
Helix 152	AQ8	M	21	42	Right-handed alpha
Helix 153	AQ9	M	45	76	Right-handed alpha
Helix 154	AR1	N	4	21	Right-handed alpha
Helix 155	AR2	N	22	42	Right-handed alpha
Helix 156	AR3	N	45	76	Right-handed alpha
Helix 157	AR4	O	4	20	Right-handed alpha
Helix 158	AR5	O	21	42	Right-handed alpha
Helix 159	AR6	O	45	76	Right-handed alpha
Helix 160	AR7	P	4	21	Right-handed alpha
Helix 161	AR8	P	21	40	Right-handed alpha
Helix 162	AR9	P	45	76	Right-handed alpha
Helix 163	AS1	Q	4	39	Right-handed alpha
Helix 164	AS2	Q	40	44	Right-handed 310
Helix 165	AS3	Q	45	76	Right-handed alpha
Helix 166	AS4	R	4	42	Right-handed alpha
Helix 167	AS5	R	45	76	Right-handed alpha
Helix 168	AS6	S	4	42	Right-handed alpha
Helix 169	AS7	S	45	76	Right-handed alpha
Helix 170	AS8	T	4	42	Right-handed alpha
Helix 171	AS9	T	45	76	Right-handed alpha
Helix 172	AT1	U	4	42	Right-handed alpha
Helix 173	AT2	U	45	76	Right-handed alpha
Helix 174	AT3	V	4	40	Right-handed alpha
Helix 175	AT4	V	41	44	Right-handed 310
Helix 176	AT5	V	45	76	Right-handed alpha
Helix 177	AT6	W	4	42	Right-handed alpha
Helix 178	AT7	W	45	76	Right-handed alpha
Helix 179	AT8	X	4	42	Right-handed alpha
Helix 180	AT9	X	45	76	Right-handed alpha
Helix 181	AU1	Y	4	42	Right-handed alpha
Helix 182	AU2	Y	44	76	Right-handed alpha
Helix 183	AU3	Z	4	22	Right-handed alpha
Helix 184	AU4	Z	23	39	Right-handed alpha
Helix 185	AU5	Z	45	76	Right-handed alpha

There are 30 sheets in PDB entry 6VOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	36	first strand
Strand 2	E	61	68	anti-parallel
Strand 3	E	46	50	anti-parallel
Strand 4	E	90	93	anti-parallel
Strand 5	E	20	27	anti-parallel
Strand 6	C	61	67	anti-parallel
Strand 7	C	53	56	anti-parallel
Strand 8	C	89	91	anti-parallel
Strand 9	C	27	36	anti-parallel
Strand 10	C	39	43	anti-parallel
Strand 11	C	71	77	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	39	42	anti-parallel
Strand 3	A	29	36	anti-parallel
Strand 4	A	88	90	anti-parallel
Strand 5	A	53	56	anti-parallel
Strand 6	A	62	67	anti-parallel
Strand 7	F	20	27	anti-parallel
Strand 8	F	30	34	anti-parallel
Strand 9	F	73	78	anti-parallel
Strand 10	F	63	68	anti-parallel
Strand 11	C	27	36	anti-parallel
Strand 12	d	231	232	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	49	first strand
Strand 2	F	90	97	anti-parallel
Strand 3	F	20	27	anti-parallel
Strand 4	A	62	67	anti-parallel
Strand 5	A	72	76	anti-parallel
Strand 6	A	39	42	anti-parallel
Strand 7	A	29	36	anti-parallel
Strand 8	D	63	68	anti-parallel
Strand 9	D	73	78	anti-parallel
Strand 10	D	30	34	anti-parallel
Strand 11	D	20	27	anti-parallel
Strand 12	B	61	67	anti-parallel
Strand 13	B	53	55	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	77	first strand
Strand 2	C	61	67	anti-parallel
Strand 3	E	20	27	anti-parallel
Strand 4	E	30	34	anti-parallel
Strand 5	E	73	78	anti-parallel
Strand 6	E	61	68	anti-parallel
Strand 7	B	30	36	anti-parallel
Strand 8	B	39	44	anti-parallel
Strand 9	B	71	76	anti-parallel
Strand 10	B	61	67	anti-parallel
Strand 11	D	20	27	anti-parallel
Strand 12	D	90	93	anti-parallel
Strand 13	D	47	52	anti-parallel
Strand 14	D	58	61	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	127	129	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	224	227	parallel
Strand 3	A	198	199	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	170	first strand
Strand 2	A	319	321	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	256	260	parallel
Strand 3	A	313	316	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	287	288	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	364	365	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	127	129	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	166	170	parallel
Strand 3	B	341	344	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	228	first strand
Strand 2	B	192	201	parallel
Strand 3	B	256	262	parallel
Strand 4	B	313	316	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	126	129	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	222	228	parallel
Strand 3	C	193	201	parallel
Strand 4	C	256	262	parallel
Strand 5	C	313	316	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	170	first strand
Strand 2	C	342	345	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	129	131	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	D	198	204	parallel
Strand 3	D	267	272	parallel
Strand 4	D	320	326	parallel
Strand 5	D	167	172	parallel
Strand 6	D	348	352	parallel
Strand 7	D	371	372	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	129	131	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	E	162	163	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	238	first strand
Strand 2	E	196	204	parallel
Strand 3	E	268	273	parallel
Strand 4	E	321	328	parallel
Strand 5	E	167	172	parallel
Strand 6	E	348	351	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	129	131	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	149	first strand
Strand 2	F	162	163	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	237	first strand
Strand 2	F	196	202	parallel
Strand 3	F	267	272	parallel
Strand 4	F	320	328	parallel
Strand 5	F	168	172	parallel
Strand 6	F	348	349	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	175	182	first strand
Strand 2	d	206	213	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	176	180	first strand
Strand 2	g	154	160	parallel
Strand 3	g	117	123	parallel
Strand 4	g	210	214	parallel
Strand 5	g	226	231	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	255	256	first strand
Strand 2	g	267	268	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	283	284	first strand
Strand 2	e	40	42	parallel
Strand 3	e	65	68	anti-parallel
Strand 4	e	74	78	anti-parallel
Strand 5	e	5	8	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	30	33	first strand
Strand 2	e	21	25	anti-parallel
Strand 3	e	49	53	anti-parallel
Strand 4	e	56	58	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	60	62	first strand
Strand 2	e	81	83	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VOL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOL