Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VOO entry

There are 9 chains in PDB entry 6VOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	GLN 506
B	ALA 2	LEU 503
C	ARG 5	GLN 504
D	LYS 17	SER 494
E	GLU 16	LEU 496
F	LYS 17	LEU 496
d	ASP 72	MET 250
g	ALA 42	CYS 363
e	MET 1	THR 131

There are130 helices in PDB entry 6VOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	151	158	Right-handed alpha
Helix 3	AA3	A	175	186	Right-handed alpha
Helix 4	AA4	A	202	216	Right-handed alpha
Helix 5	AA5	A	232	253	Right-handed alpha
Helix 6	AA6	A	263	278	Right-handed alpha
Helix 7	AA7	A	283	287	Right-handed 310
Helix 8	AA8	A	291	300	Right-handed alpha
Helix 9	AA9	A	329	337	Right-handed alpha
Helix 10	AB1	A	346	352	Right-handed alpha
Helix 11	AB2	A	367	372	Right-handed 310
Helix 12	AB3	A	373	380	Right-handed alpha
Helix 13	AB4	A	382	397	Right-handed alpha
Helix 14	AB5	A	404	421	Right-handed alpha
Helix 15	AB6	A	430	443	Right-handed alpha
Helix 16	AB7	A	453	468	Right-handed alpha
Helix 17	AB8	A	470	479	Right-handed alpha
Helix 18	AB9	A	483	505	Right-handed alpha
Helix 19	AC1	B	9	19	Right-handed alpha
Helix 20	AC2	B	151	158	Right-handed alpha
Helix 21	AC3	B	176	186	Right-handed alpha
Helix 22	AC4	B	202	217	Right-handed alpha
Helix 23	AC5	B	218	220	Right-handed 310
Helix 24	AC6	B	232	252	Right-handed alpha
Helix 25	AC7	B	263	278	Right-handed alpha
Helix 26	AC8	B	283	287	Right-handed 310
Helix 27	AC9	B	290	300	Right-handed alpha
Helix 28	AD1	B	306	310	Right-handed 310
Helix 29	AD2	B	329	339	Right-handed alpha
Helix 30	AD3	B	346	352	Right-handed alpha
Helix 31	AD4	B	359	363	Right-handed 310
Helix 32	AD5	B	367	371	Right-handed 310
Helix 33	AD6	B	373	397	Right-handed alpha
Helix 34	AD7	B	402	410	Right-handed alpha
Helix 35	AD8	B	413	422	Right-handed alpha
Helix 36	AD9	B	430	443	Right-handed alpha
Helix 37	AE1	B	453	469	Right-handed alpha
Helix 38	AE2	B	469	480	Right-handed alpha
Helix 39	AE3	B	483	503	Right-handed alpha
Helix 40	AE4	C	6	20	Right-handed alpha
Helix 41	AE5	C	101	105	Right-handed 310
Helix 42	AE6	C	151	158	Right-handed alpha
Helix 43	AE7	C	175	187	Right-handed alpha
Helix 44	AE8	C	202	217	Right-handed alpha
Helix 45	AE9	C	232	253	Right-handed alpha
Helix 46	AF1	C	264	278	Right-handed alpha
Helix 47	AF2	C	283	287	Right-handed 310
Helix 48	AF3	C	290	300	Right-handed alpha
Helix 49	AF4	C	329	339	Right-handed alpha
Helix 50	AF5	C	346	352	Right-handed alpha
Helix 51	AF6	C	367	372	Right-handed 310
Helix 52	AF7	C	373	394	Right-handed alpha
Helix 53	AF8	C	395	400	Right-handed 310
Helix 54	AF9	C	404	418	Right-handed alpha
Helix 55	AG1	C	419	422	Right-handed 310
Helix 56	AG2	C	430	444	Right-handed alpha
Helix 57	AG3	C	453	469	Right-handed alpha
Helix 58	AG4	C	469	479	Right-handed alpha
Helix 59	AG5	C	483	503	Right-handed alpha
Helix 60	AG6	D	103	107	Right-handed 310
Helix 61	AG7	D	153	160	Right-handed alpha
Helix 62	AG8	D	177	190	Right-handed alpha
Helix 63	AG9	D	205	220	Right-handed alpha
Helix 64	AH1	D	242	263	Right-handed alpha
Helix 65	AH2	D	275	289	Right-handed alpha
Helix 66	AH3	D	302	311	Right-handed alpha
Helix 67	AH4	D	330	333	Right-handed 310
Helix 68	AH5	D	336	346	Right-handed alpha
Helix 69	AH6	D	353	359	Right-handed alpha
Helix 70	AH7	D	381	401	Right-handed alpha
Helix 71	AH8	D	401	408	Right-handed alpha
Helix 72	AH9	D	409	413	Right-handed 310
Helix 73	AI1	D	414	431	Right-handed alpha
Helix 74	AI2	D	438	443	Right-handed alpha
Helix 75	AI3	D	450	463	Right-handed alpha
Helix 76	AI4	D	470	474	Right-handed 310
Helix 77	AI5	D	480	494	Right-handed alpha
Helix 78	AI6	E	153	160	Right-handed alpha
Helix 79	AI7	E	178	193	Right-handed alpha
Helix 80	AI8	E	205	219	Right-handed alpha
Helix 81	AI9	E	242	263	Right-handed alpha
Helix 82	AJ1	E	274	290	Right-handed alpha
Helix 83	AJ2	E	301	311	Right-handed alpha
Helix 84	AJ3	E	329	333	Right-handed 310
Helix 85	AJ4	E	336	343	Right-handed alpha
Helix 86	AJ5	E	353	359	Right-handed alpha
Helix 87	AJ6	E	376	381	Right-handed alpha
Helix 88	AJ7	E	381	408	Right-handed alpha
Helix 89	AJ8	E	409	413	Right-handed 310
Helix 90	AJ9	E	414	431	Right-handed alpha
Helix 91	AK1	E	438	443	Right-handed alpha
Helix 92	AK2	E	450	463	Right-handed alpha
Helix 93	AK3	E	470	474	Right-handed 310
Helix 94	AK4	E	480	496	Right-handed alpha
Helix 95	AK5	F	103	107	Right-handed 310
Helix 96	AK6	F	153	159	Right-handed alpha
Helix 97	AK7	F	178	190	Right-handed alpha
Helix 98	AK8	F	205	219	Right-handed alpha
Helix 99	AK9	F	226	230	Right-handed 310
Helix 100	AL1	F	242	247	Right-handed alpha
Helix 101	AL2	F	248	263	Right-handed alpha
Helix 102	AL3	F	275	287	Right-handed alpha
Helix 103	AL4	F	301	313	Right-handed alpha
Helix 104	AL5	F	330	333	Right-handed 310
Helix 105	AL6	F	336	344	Right-handed alpha
Helix 106	AL7	F	353	358	Right-handed alpha
Helix 107	AL8	F	376	381	Right-handed alpha
Helix 108	AL9	F	381	401	Right-handed alpha
Helix 109	AM1	F	401	407	Right-handed alpha
Helix 110	AM2	F	414	432	Right-handed alpha
Helix 111	AM3	F	450	462	Right-handed alpha
Helix 112	AM4	F	470	475	Right-handed 310
Helix 113	AM5	F	479	496	Right-handed alpha
Helix 114	AM6	d	73	89	Right-handed alpha
Helix 115	AM7	d	91	107	Right-handed alpha
Helix 116	AM8	d	108	116	Right-handed alpha
Helix 117	AM9	d	121	137	Right-handed alpha
Helix 118	AN1	d	141	152	Right-handed alpha
Helix 119	AN2	d	154	156	Right-handed 310
Helix 120	AN3	d	157	173	Right-handed alpha
Helix 121	AN4	d	188	203	Right-handed alpha
Helix 122	AN5	d	237	249	Right-handed alpha
Helix 123	AN6	g	43	99	Right-handed alpha
Helix 124	AN7	g	132	152	Right-handed alpha
Helix 125	AN8	g	161	171	Right-handed alpha
Helix 126	AN9	g	188	204	Right-handed alpha
Helix 127	AO1	g	246	251	Right-handed 310
Helix 128	AO2	g	287	363	Right-handed alpha
Helix 129	AO3	e	88	106	Right-handed alpha
Helix 130	AO4	e	108	130	Right-handed alpha

There are 21 sheets in PDB entry 6VOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	52	55	anti-parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	29	36	anti-parallel
Strand 5	A	39	44	anti-parallel
Strand 6	A	71	76	anti-parallel
Strand 7	A	61	67	anti-parallel
Strand 8	F	20	27	anti-parallel
Strand 9	F	90	93	anti-parallel
Strand 10	F	46	52	anti-parallel
Strand 11	F	58	68	anti-parallel
Strand 12	F	73	78	anti-parallel
Strand 13	F	30	34	anti-parallel
Strand 14	F	20	27	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	222	227	parallel
Strand 3	A	193	199	parallel
Strand 4	A	256	262	parallel
Strand 5	A	313	321	parallel
Strand 6	A	166	170	parallel
Strand 7	A	341	345	parallel

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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	52	56	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	29	35	anti-parallel
Strand 5	B	39	44	anti-parallel
Strand 6	B	71	76	anti-parallel
Strand 7	B	61	67	anti-parallel
Strand 8	D	20	27	anti-parallel
Strand 9	D	90	97	anti-parallel
Strand 10	D	45	49	anti-parallel
Strand 11	D	61	70	anti-parallel
Strand 12	D	73	78	anti-parallel
Strand 13	D	30	34	anti-parallel
Strand 14	D	20	27	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	127	129	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	222	226	parallel
Strand 3	B	192	198	parallel
Strand 4	B	256	262	parallel
Strand 5	B	313	321	parallel
Strand 6	B	167	170	parallel
Strand 7	B	342	344	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	93	first strand
Strand 2	E	20	27	anti-parallel
Strand 3	C	61	67	anti-parallel
Strand 4	C	72	76	anti-parallel
Strand 5	C	39	43	anti-parallel
Strand 6	C	27	36	anti-parallel
Strand 7	d	231	235	anti-parallel
Strand 8	d	221	225	anti-parallel
Strand 9	d	179	182	anti-parallel
Strand 10	d	210	213	parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	93	first strand
Strand 2	E	46	49	anti-parallel
Strand 3	E	61	68	anti-parallel
Strand 4	E	73	78	anti-parallel
Strand 5	E	30	34	anti-parallel
Strand 6	E	20	27	anti-parallel
Strand 7	C	61	67	anti-parallel
Strand 8	C	52	55	anti-parallel
Strand 9	C	88	91	anti-parallel
Strand 10	C	27	36	anti-parallel
Strand 11	C	39	43	anti-parallel
Strand 12	C	72	76	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	126	129	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	222	227	parallel
Strand 3	C	192	199	parallel
Strand 4	C	256	262	parallel
Strand 5	C	313	321	parallel
Strand 6	C	166	170	parallel
Strand 7	C	341	345	parallel
Strand 8	C	364	365	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	129	131	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	232	236	parallel
Strand 3	D	197	201	parallel
Strand 4	D	267	273	parallel
Strand 5	D	320	328	parallel
Strand 6	D	167	172	parallel
Strand 7	D	349	351	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	129	131	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	232	238	parallel
Strand 3	E	196	204	parallel
Strand 4	E	267	272	parallel
Strand 5	E	320	326	parallel
Strand 6	E	167	170	parallel
Strand 7	E	348	350	parallel
Strand 8	E	371	372	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	E	162	163	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	129	131	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	232	237	parallel
Strand 3	F	197	202	parallel
Strand 4	F	268	272	parallel
Strand 5	F	321	328	parallel
Strand 6	F	167	172	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	157	159	first strand
Strand 2	g	119	122	parallel
Strand 3	g	210	214	parallel
Strand 4	g	226	229	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	256	259	first strand
Strand 2	g	264	267	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	13	15	first strand
Strand 2	e	4	8	anti-parallel
Strand 3	e	73	78	parallel
Strand 4	e	65	68	anti-parallel
Strand 5	e	41	44	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	22	24	first strand
Strand 2	e	31	33	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	48	52	first strand
Strand 2	e	57	62	anti-parallel
Strand 3	e	81	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOO