Analysis of interatomic Contacts of Structural Units in PDB entry:
6VP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VP9 entry

There are 3 chains in PDB entry 6VP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2THR 160
B
 ARG 13ILE 972
C
 MET 1MET 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6VP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 38Right-handed alpha
Helix 2
AA2
A
87 103Right-handed alpha
Helix 3
AA3
A
116 127Right-handed alpha
Helix 4
AA4
B
16 21Right-handed alpha
Helix 5
AA5
B
22 24Right-handed 310
Helix 6
AA6
B
30 35Right-handed alpha
Helix 7
AA7
B
47 55Right-handed alpha
Helix 8
AA8
B
61 72Right-handed alpha
Helix 9
AA9
B
78 92Right-handed alpha
Helix 10
AB1
B
95 107Right-handed alpha
Helix 11
AB2
B
113 127Right-handed alpha
Helix 12
AB3
B
128 143Right-handed alpha
Helix 13
AB4
B
145 162Right-handed alpha
Helix 14
AB5
B
166 170Right-handed 310
Helix 15
AB6
B
173 186Right-handed alpha
Helix 16
AB7
B
193 207Right-handed alpha
Helix 17
AB8
B
208 218Right-handed alpha
Helix 18
AB9
B
221 225Right-handed 310
Helix 19
AC1
B
233 242Right-handed alpha
Helix 20
AC2
B
245 260Right-handed alpha
Helix 21
AC3
B
262 280Right-handed alpha
Helix 22
AC4
B
298 315Right-handed alpha
Helix 23
AC5
B
321 336Right-handed alpha
Helix 24
AC6
B
347 359Right-handed alpha
Helix 25
AC7
B
365 370Right-handed alpha
Helix 26
AC8
B
372 376Right-handed 310
Helix 27
AC9
B
379 382Right-handed 310
Helix 28
AD1
B
383 389Right-handed alpha
Helix 29
AD2
B
408 424Right-handed alpha
Helix 30
AD3
B
433 449Right-handed alpha
Helix 31
AD4
B
465 470Right-handed alpha
Helix 32
AD5
B
474 483Right-handed alpha
Helix 33
AD6
B
487 502Right-handed alpha
Helix 34
AD7
B
505 520Right-handed alpha
Helix 35
AD8
B
522 530Right-handed alpha
Helix 36
AD9
B
537 542Right-handed alpha
Helix 37
AE1
B
543 550Right-handed alpha
Helix 38
AE2
B
555 583Right-handed alpha
Helix 39
AE3
B
592 605Right-handed alpha
Helix 40
AE4
B
606 625Right-handed alpha
Helix 41
AE5
B
630 637Right-handed alpha
Helix 42
AE6
B
672 698Right-handed alpha
Helix 43
AE7
B
724 728Right-handed alpha
Helix 44
AE8
B
728 747Right-handed alpha
Helix 45
AE9
B
760 767Right-handed alpha
Helix 46
AF1
B
769 790Right-handed alpha
Helix 47
AF2
B
794 820Right-handed alpha
Helix 48
AF3
B
826 830Right-handed 310
Helix 49
AF4
B
835 869Right-handed alpha
Helix 50
AF5
B
883 904Right-handed alpha
Helix 51
AF6
B
907 912Right-handed alpha
Helix 52
AF7
B
933 965Right-handed alpha
Helix 53
AF8
B
966 969Right-handed 310
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There are 2 sheets in PDB entry 6VP9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
53 57anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 113first strand
Strand 2
A
149 155anti-parallel
Strand 3
A
133 134anti-parallel
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