Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VPB entry

There are 2 chains in PDB entry 6VPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 324
B
 MET 1PHE 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6VPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
32 43Right-handed alpha
Helix 3
AA3
A
53 60Right-handed alpha
Helix 4
AA4
A
75 89Right-handed alpha
Helix 5
AA5
A
102 115Right-handed alpha
Helix 6
AA6
A
143 158Right-handed alpha
Helix 7
AA7
A
176 181Right-handed 310
Helix 8
AA8
A
190 219Right-handed alpha
Helix 9
AA9
A
220 222Right-handed 310
Helix 10
AB1
A
226 230Right-handed 310
Helix 11
AB2
A
234 243Right-handed alpha
Helix 12
AB3
A
250 263Right-handed alpha
Helix 13
AB4
A
277 290Right-handed alpha
Helix 14
AB5
A
293 307Right-handed alpha
Helix 15
AB6
A
311 324Right-handed alpha
Helix 16
AB7
B
9 22Right-handed alpha
Helix 17
AB8
B
32 42Right-handed alpha
Helix 18
AB9
B
53 61Right-handed alpha
Helix 19
AC1
B
75 89Right-handed alpha
Helix 20
AC2
B
102 115Right-handed alpha
Helix 21
AC3
B
130 135Right-handed alpha
Helix 22
AC4
B
143 150Right-handed alpha
Helix 23
AC5
B
150 158Right-handed alpha
Helix 24
AC6
B
176 181Right-handed 310
Helix 25
AC7
B
190 219Right-handed alpha
Helix 26
AC8
B
220 222Right-handed 310
Helix 27
AC9
B
226 230Right-handed 310
Helix 28
AD1
B
234 243Right-handed alpha
Helix 29
AD2
B
250 263Right-handed alpha
Helix 30
AD3
B
276 289Right-handed alpha
Helix 31
AD4
B
293 307Right-handed alpha
Helix 32
AD5
B
311 324Right-handed alpha
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There are 2 sheets in PDB entry 6VPB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
67 70parallel
Strand 5
A
94 97parallel
Strand 6
A
119 126parallel
Strand 7
A
137 141anti-parallel
Strand 8
A
183 187parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
25 29parallel
Strand 3
B
2 6parallel
Strand 4
B
67 70parallel
Strand 5
B
94 97parallel
Strand 6
B
119 126parallel
Strand 7
B
137 141anti-parallel
Strand 8
B
183 187parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il