Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VPC entry

There are 7 chains in PDB entry 6VPC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 2	G 82
B	LYS 201	GLN 1561
C	C 1	G 40
D	C 11	C 25
D	C 27	G 50
E	GLU 5	TYR 149
F	GLU 5	LYS 160

There are 79 helices in PDB entry 6VPC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	256	291	Right-handed alpha
Helix 2	AA2	B	293	300	Right-handed alpha
Helix 3	AA3	B	318	329	Right-handed alpha
Helix 4	AA4	B	331	342	Right-handed alpha
Helix 5	AA5	B	347	361	Right-handed alpha
Helix 6	AA6	B	378	393	Right-handed alpha
Helix 7	AA7	B	404	411	Right-handed alpha
Helix 8	AA8	B	414	425	Right-handed alpha
Helix 9	AA9	B	433	443	Right-handed alpha
Helix 10	AB1	B	467	480	Right-handed alpha
Helix 11	AB2	B	483	499	Right-handed alpha
Helix 12	AB3	B	499	504	Right-handed alpha
Helix 13	AB4	B	512	540	Right-handed alpha
Helix 14	AB5	B	543	549	Right-handed alpha
Helix 15	AB6	B	555	561	Right-handed alpha
Helix 16	AB7	B	565	580	Right-handed alpha
Helix 17	AB8	B	583	592	Right-handed alpha
Helix 18	AB9	B	603	607	Right-handed 310
Helix 19	AC1	B	608	624	Right-handed alpha
Helix 20	AC2	B	627	633	Right-handed alpha
Helix 21	AC3	B	633	643	Right-handed alpha
Helix 22	AC4	B	674	679	Right-handed alpha
Helix 23	AC5	B	680	691	Right-handed alpha
Helix 24	AC6	B	709	722	Right-handed alpha
Helix 25	AC7	B	738	749	Right-handed alpha
Helix 26	AC8	B	757	765	Right-handed alpha
Helix 27	AC9	B	765	771	Right-handed alpha
Helix 28	AD1	B	788	799	Right-handed alpha
Helix 29	AD2	B	800	806	Right-handed alpha
Helix 30	AD3	B	809	823	Right-handed alpha
Helix 31	AD4	B	825	834	Right-handed alpha
Helix 32	AD5	B	835	839	Right-handed 310
Helix 33	AD6	B	841	851	Right-handed alpha
Helix 34	AD7	B	860	866	Right-handed alpha
Helix 35	AD8	B	875	882	Right-handed alpha
Helix 36	AD9	B	889	896	Right-handed alpha
Helix 37	AE1	B	900	906	Right-handed alpha
Helix 38	AE2	B	917	923	Right-handed alpha
Helix 39	AE3	B	927	948	Right-handed alpha
Helix 40	AE4	B	974	989	Right-handed alpha
Helix 41	AE5	B	991	996	Right-handed alpha
Helix 42	AE6	B	999	1003	Right-handed 310
Helix 43	AE7	B	1005	1014	Right-handed alpha
Helix 44	AE8	B	1029	1033	Right-handed 310
Helix 45	AE9	B	1048	1050	Right-handed 310
Helix 46	AF1	B	1057	1062	Right-handed 310
Helix 47	AF2	B	1069	1086	Right-handed alpha
Helix 48	AF3	B	1090	1102	Right-handed alpha
Helix 49	AF4	B	1122	1137	Right-handed alpha
Helix 50	AF5	B	1156	1168	Right-handed alpha
Helix 51	AF6	B	1177	1198	Right-handed alpha
Helix 52	AF7	B	1201	1206	Right-handed alpha
Helix 53	AF8	B	1216	1220	Right-handed 310
Helix 54	AF9	B	1227	1240	Right-handed alpha
Helix 55	AG1	B	1241	1244	Right-handed 310
Helix 56	AG2	B	1275	1285	Right-handed alpha
Helix 57	AG3	B	1324	1329	Right-handed alpha
Helix 58	AG4	B	1367	1374	Right-handed alpha
Helix 59	AG5	B	1374	1383	Right-handed alpha
Helix 60	AG6	B	1388	1392	Right-handed 310
Helix 61	AG7	B	1404	1406	Right-handed 310
Helix 62	AG8	B	1426	1438	Right-handed alpha
Helix 63	AG9	B	1445	1459	Right-handed alpha
Helix 64	AH1	B	1460	1477	Right-handed alpha
Helix 65	AH2	B	1480	1494	Right-handed alpha
Helix 66	AH3	B	1498	1509	Right-handed alpha
Helix 67	AH4	B	1510	1513	Right-handed 310
Helix 68	AH5	B	1537	1541	Right-handed 310
Helix 69	AH6	E	7	25	Right-handed alpha
Helix 70	AH7	E	47	52	Right-handed alpha
Helix 71	AH8	E	57	71	Right-handed alpha
Helix 72	AH9	E	87	98	Right-handed alpha
Helix 73	AI1	E	137	149	Right-handed alpha
Helix 74	AI2	F	7	25	Right-handed alpha
Helix 75	AI3	F	47	52	Right-handed alpha
Helix 76	AI4	F	57	71	Right-handed alpha
Helix 77	AI5	F	87	98	Right-handed alpha
Helix 78	AI6	F	137	150	Right-handed alpha
Helix 79	AI7	F	153	160	Right-handed alpha

There are 12 sheets in PDB entry 6VPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1151	1155	first strand
Strand 2	B	955	960	parallel
Strand 3	B	202	208	parallel
Strand 4	B	212	219	anti-parallel
Strand 5	B	245	249	anti-parallel
Strand 6	B	1290	1293	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	230	first strand
Strand 2	B	239	243	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	1554	1558	parallel
Strand 3	B	1543	1547	anti-parallel
Strand 4	B	1400	1402	anti-parallel
Strand 5	B	1408	1411	anti-parallel
Strand 6	B	1417	1419	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	726	first strand
Strand 2	B	735	736	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1034	1037	first strand
Strand 2	B	1052	1055	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1246	1248	first strand
Strand 2	B	1254	1256	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1260	1262	first strand
Strand 2	B	1269	1272	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1317	1318	first strand
Strand 2	B	1330	1331	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1353	1364	first strand
Strand 2	B	1336	1348	anti-parallel
Strand 3	B	1393	1395	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1521	1523	first strand
Strand 2	B	1526	1528	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	45	first strand
Strand 2	E	31	36	anti-parallel
Strand 3	E	79	82	anti-parallel
Strand 4	E	101	103	parallel
Strand 5	E	131	133	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	45	first strand
Strand 2	F	31	36	anti-parallel
Strand 3	F	79	82	anti-parallel
Strand 4	F	101	104	parallel
Strand 5	F	131	133	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VPC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPC