Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VPL entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6VPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1THR 287
A
 LEU 289LYS 389
B
 MET -1THR 287
B
 LEU 289LYS 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6VPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 131Right-handed 310
Helix 2
AA2
A
166 173Right-handed alpha
Helix 3
AA3
A
174 186Right-handed alpha
Helix 4
AA4
A
217 226Right-handed alpha
Helix 5
AA5
A
229 250Right-handed alpha
Helix 6
AA6
A
258 260Right-handed 310
Helix 7
AA7
A
288 292Right-handed alpha
Helix 8
AA8
A
297 303Right-handed alpha
Helix 9
AA9
A
304 308Right-handed 310
Helix 10
AB1
A
309 325Right-handed alpha
Helix 11
AB2
A
333 344Right-handed alpha
Helix 12
AB3
A
353 364Right-handed alpha
Helix 13
AB4
A
367 371Right-handed 310
Helix 14
AB5
A
373 379Right-handed alpha
Helix 15
AB6
A
380 387Right-handed alpha
Helix 16
AB7
B
129 131Right-handed 310
Helix 17
AB8
B
166 172Right-handed alpha
Helix 18
AB9
B
174 186Right-handed alpha
Helix 19
AC1
B
217 226Right-handed alpha
Helix 20
AC2
B
229 250Right-handed alpha
Helix 21
AC3
B
258 260Right-handed 310
Helix 22
AC4
B
288 292Right-handed alpha
Helix 23
AC5
B
293 296Right-handed 310
Helix 24
AC6
B
297 303Right-handed alpha
Helix 25
AC7
B
304 308Right-handed 310
Helix 26
AC8
B
309 325Right-handed alpha
Helix 27
AC9
B
333 344Right-handed alpha
Helix 28
AD1
B
353 364Right-handed alpha
Helix 29
AD2
B
367 371Right-handed 310
Helix 30
AD3
B
373 379Right-handed alpha
Helix 31
AD4
B
380 387Right-handed alpha
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There are 6 sheets in PDB entry 6VPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 142first strand
Strand 2
A
145 152anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
196 201anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
279 280anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
270 272anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 141first strand
Strand 2
B
146 152anti-parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
205 210anti-parallel
Strand 5
B
196 201anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
279 280anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
270 272anti-parallel
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