Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VPO entry

There are 3 chains in PDB entry 6VPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2SER 439
B
 ARG 2ASP 437
C
 GLN 18PRO 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6VPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
75 80Right-handed alpha
Helix 3
AA3
A
102 108Right-handed alpha
Helix 4
AA4
A
110 129Right-handed alpha
Helix 5
AA5
A
144 161Right-handed alpha
Helix 6
AA6
A
182 198Right-handed alpha
Helix 7
AA7
A
205 214Right-handed alpha
Helix 8
AA8
A
223 240Right-handed alpha
Helix 9
AA9
A
241 244Right-handed 310
Helix 10
AB1
A
254 259Right-handed alpha
Helix 11
AB2
A
287 295Right-handed alpha
Helix 12
AB3
A
296 301Right-handed 310
Helix 13
AB4
A
324 338Right-handed alpha
Helix 14
AB5
A
382 402Right-handed alpha
Helix 15
AB6
A
404 412Right-handed alpha
Helix 16
AB7
A
415 438Right-handed alpha
Helix 17
AB8
B
10 29Right-handed alpha
Helix 18
AB9
B
40 47Right-handed 310
Helix 19
AC1
B
48 51Right-handed 310
Helix 20
AC2
B
71 81Right-handed alpha
Helix 21
AC3
B
88 90Right-handed 310
Helix 22
AC4
B
102 108Right-handed alpha
Helix 23
AC5
B
109 129Right-handed alpha
Helix 24
AC6
B
143 161Right-handed alpha
Helix 25
AC7
B
183 198Right-handed alpha
Helix 26
AC8
B
206 216Right-handed alpha
Helix 27
AC9
B
223 244Right-handed alpha
Helix 28
AD1
B
251 260Right-handed alpha
Helix 29
AD2
B
288 297Right-handed alpha
Helix 30
AD3
B
298 301Right-handed 310
Helix 31
AD4
B
324 339Right-handed alpha
Helix 32
AD5
B
383 401Right-handed alpha
Helix 33
AD6
B
405 410Right-handed alpha
Helix 34
AD7
B
414 437Right-handed alpha
Helix 35
AD8
C
30 36Right-handed alpha
Helix 36
AD9
C
75 83Right-handed alpha
Helix 37
AE1
C
83 90Right-handed alpha
Helix 38
AE2
C
91 94Right-handed 310
Helix 39
AE3
C
108 114Right-handed alpha
Helix 40
AE4
C
132 149Right-handed alpha
Helix 41
AE5
C
202 217Right-handed alpha
Helix 42
AE6
C
267 272Right-handed alpha
Helix 43
AE7
C
277 301Right-handed alpha
Helix 44
AE8
C
307 310Right-handed 310
Helix 45
AE9
C
311 317Right-handed alpha
Helix 46
AF1
C
339 353Right-handed alpha
Helix 47
AF2
C
354 356Right-handed 310
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There are 10 sheets in PDB entry 6VPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
67 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
60 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
353 355parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 272parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 70first strand
Strand 2
C
21 26parallel
Strand 3
C
325 333parallel
Strand 4
C
96 101parallel
Strand 5
C
253 261parallel
Strand 6
C
232 242anti-parallel
Strand 7
C
159 161anti-parallel
Strand 8
C
166 168anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 70first strand
Strand 2
C
21 26parallel
Strand 3
C
325 333parallel
Strand 4
C
96 101parallel
Strand 5
C
253 261parallel
Strand 6
C
232 242anti-parallel
Strand 7
C
151 156anti-parallel
Strand 8
C
199 200anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
C
50 54anti-parallel
Strand 3
C
61 65anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 182first strand
Strand 2
C
190 192anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
219 220first strand
Strand 2
C
228 229anti-parallel
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