Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VPP entry

There are 3 chains in PDB entry 6VPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2SER 439
B
 ARG 2ASP 437
C
 ASN 17ASN 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6VPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 28Right-handed alpha
Helix 2
AA2
A
72 81Right-handed alpha
Helix 3
AA3
A
102 108Right-handed alpha
Helix 4
AA4
A
111 129Right-handed alpha
Helix 5
AA5
A
144 161Right-handed alpha
Helix 6
AA6
A
182 198Right-handed alpha
Helix 7
AA7
A
205 216Right-handed alpha
Helix 8
AA8
A
223 239Right-handed alpha
Helix 9
AA9
A
254 260Right-handed alpha
Helix 10
AB1
A
287 296Right-handed alpha
Helix 11
AB2
A
297 301Right-handed 310
Helix 12
AB3
A
306 309Right-handed 310
Helix 13
AB4
A
324 338Right-handed alpha
Helix 14
AB5
A
383 402Right-handed alpha
Helix 15
AB6
A
404 408Right-handed 310
Helix 16
AB7
A
414 438Right-handed alpha
Helix 17
AB8
B
10 28Right-handed alpha
Helix 18
AB9
B
40 48Right-handed alpha
Helix 19
AC1
B
49 51Right-handed 310
Helix 20
AC2
B
72 81Right-handed alpha
Helix 21
AC3
B
88 90Right-handed 310
Helix 22
AC4
B
102 107Right-handed alpha
Helix 23
AC5
B
109 129Right-handed alpha
Helix 24
AC6
B
143 161Right-handed alpha
Helix 25
AC7
B
182 198Right-handed alpha
Helix 26
AC8
B
206 216Right-handed alpha
Helix 27
AC9
B
223 244Right-handed alpha
Helix 28
AD1
B
251 260Right-handed alpha
Helix 29
AD2
B
287 297Right-handed alpha
Helix 30
AD3
B
324 339Right-handed alpha
Helix 31
AD4
B
383 402Right-handed alpha
Helix 32
AD5
B
405 412Right-handed alpha
Helix 33
AD6
B
414 437Right-handed alpha
Helix 34
AD7
C
30 36Right-handed alpha
Helix 35
AD8
C
75 93Right-handed alpha
Helix 36
AD9
C
106 114Right-handed alpha
Helix 37
AE1
C
132 148Right-handed alpha
Helix 38
AE2
C
203 217Right-handed alpha
Helix 39
AE3
C
267 272Right-handed alpha
Helix 40
AE4
C
278 301Right-handed alpha
Helix 41
AE5
C
311 317Right-handed alpha
Helix 42
AE6
C
317 323Right-handed alpha
Helix 43
AE7
C
339 351Right-handed alpha
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There are 10 sheets in PDB entry 6VPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 8parallel
Strand 4
A
132 138parallel
Strand 5
A
165 169parallel
Strand 6
A
200 202parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
351 356anti-parallel
Strand 3
A
311 321parallel
Strand 4
A
373 381anti-parallel
Strand 5
A
269 272anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
351 356anti-parallel
Strand 3
A
311 321parallel
Strand 4
A
342 343parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
201 205parallel
Strand 7
B
267 272parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
C
21 26parallel
Strand 3
C
327 329parallel
Strand 4
C
97 101parallel
Strand 5
C
254 261parallel
Strand 6
C
232 240anti-parallel
Strand 7
C
153 162anti-parallel
Strand 8
C
198 199anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 168first strand
Strand 2
C
153 162anti-parallel
Strand 3
C
232 240anti-parallel
Strand 4
C
254 261anti-parallel
Strand 5
C
97 101parallel
Strand 6
C
327 329parallel
Strand 7
C
21 26parallel
Strand 8
C
332 333parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 44first strand
Strand 2
C
50 52anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 181first strand
Strand 2
C
191 193anti-parallel
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