Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VPQ entry

There are 12 chains in PDB entry 6VPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 109SER 153
A
 GLY 155GLU 195
B
 LYS 109SER 153
B
 GLY 155GLU 195
C
 LYS 109SER 153
C
 GLY 155GLU 195
D
 LYS 109SER 153
D
 GLY 155GLU 195
E
 LYS 109SER 153
E
 GLY 155GLU 195
F
 LYS 109SER 153
F
 GLY 155GLU 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6VPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
134 138Right-handed 310
Helix 2
AA2
A
140 153Right-handed alpha
Helix 3
AA3
A
173 182Right-handed alpha
Helix 4
AA4
A
186 188Right-handed 310
Helix 5
AA5
B
134 138Right-handed 310
Helix 6
AA6
B
140 153Right-handed alpha
Helix 7
AA7
B
173 182Right-handed alpha
Helix 8
AA8
B
186 188Right-handed 310
Helix 9
AA9
C
134 138Right-handed 310
Helix 10
AB1
C
140 153Right-handed alpha
Helix 11
AB2
C
173 182Right-handed alpha
Helix 12
AB3
C
186 188Right-handed 310
Helix 13
AB4
D
134 138Right-handed 310
Helix 14
AB5
D
140 153Right-handed alpha
Helix 15
AB6
D
173 182Right-handed alpha
Helix 16
AB7
D
186 188Right-handed 310
Helix 17
AB8
E
134 138Right-handed 310
Helix 18
AB9
E
140 153Right-handed alpha
Helix 19
AC1
E
173 182Right-handed alpha
Helix 20
AC2
E
186 188Right-handed 310
Helix 21
AC3
F
134 138Right-handed 310
Helix 22
AC4
F
140 153Right-handed alpha
Helix 23
AC5
F
173 182Right-handed alpha
Helix 24
AC6
F
186 188Right-handed 310
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There are 6 sheets in PDB entry 6VPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 160first strand
Strand 2
B
163 166anti-parallel
Strand 3
B
127 132anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
B
190 192parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
163 167anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
C
115 121anti-parallel
Strand 5
A
190 192parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 160first strand
Strand 2
C
163 167anti-parallel
Strand 3
C
127 132anti-parallel
Strand 4
B
115 121anti-parallel
Strand 5
C
190 192parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
156 160first strand
Strand 2
E
163 167anti-parallel
Strand 3
E
127 132anti-parallel
Strand 4
D
115 121anti-parallel
Strand 5
E
190 192parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
156 160first strand
Strand 2
D
163 167anti-parallel
Strand 3
D
127 132anti-parallel
Strand 4
F
115 121anti-parallel
Strand 5
D
190 192parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
156 160first strand
Strand 2
F
163 167anti-parallel
Strand 3
F
127 132anti-parallel
Strand 4
E
115 121anti-parallel
Strand 5
F
190 192parallel
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