Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VPT entry

There is 1 chain in PDB entry 6VPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ASN 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6VPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
21 28Right-handed alpha
Helix 3
AA3
A
29 31Right-handed 310
Helix 4
AA4
A
34 48Right-handed alpha
Helix 5
AA5
A
62 80Right-handed alpha
Helix 6
AA6
A
82 85Right-handed 310
Helix 7
AA7
A
86 102Right-handed alpha
Helix 8
AA8
A
118 133Right-handed alpha
Helix 9
AA9
A
146 156Right-handed alpha
Helix 10
AB1
A
157 159Right-handed 310
Helix 11
AB2
A
167 177Right-handed 310
Helix 12
AB3
A
180 184Right-handed 310
Helix 13
AB4
A
199 210Right-handed alpha
Helix 14
AB5
A
214 228Right-handed alpha
Helix 15
AB6
A
238 251Right-handed alpha
Helix 16
AB7
A
259 276Right-handed alpha
Helix 17
AB8
A
293 307Right-handed alpha
Helix 18
AB9
A
313 318Right-handed alpha
Helix 19
AC1
A
335 349Right-handed alpha
Helix 20
AC2
A
355 368Right-handed alpha
Helix 21
AC3
A
383 396Right-handed alpha
Helix 22
AC4
A
399 413Right-handed alpha
Helix 23
AC5
A
428 447Right-handed alpha
Helix 24
AC6
A
450 462Right-handed alpha
Helix 25
AC7
A
481 499Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6VPT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
232 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
478 479anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il