Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VPX entry

There are 7 chains in PDB entry 6VPX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 31	VAL 505
E	GLN 33	GLN 507
C	ALA 31	VAL 506
D	ALA 512	ASP 664
B	PHE 522	ASP 664
F	LEU 523	GLU 659
H	GLU 1	GLU 1

There are 53 helices in PDB entry 6VPX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	106	Right-handed alpha
Helix 2	AA2	A	107	115	Right-handed alpha
Helix 3	AA3	A	122	126	Right-handed 310
Helix 4	AA4	A	335	350	Right-handed alpha
Helix 5	AA5	A	369	373	Right-handed alpha
Helix 6	AA6	A	474	482	Right-handed 310
Helix 7	AA7	E	99	106	Right-handed alpha
Helix 8	AA8	E	107	115	Right-handed alpha
Helix 9	AA9	E	334	352	Right-handed alpha
Helix 10	AB1	E	368	373	Right-handed alpha
Helix 11	AB2	E	387	392	Right-handed alpha
Helix 12	AB3	E	427	429	Right-handed 310
Helix 13	AB4	E	475	480	Right-handed alpha
Helix 14	AB5	C	99	117	Right-handed alpha
Helix 15	AB6	C	122	126	Right-handed 310
Helix 16	AB7	C	334	349	Right-handed alpha
Helix 17	AB8	C	368	373	Right-handed alpha
Helix 18	AB9	C	387	391	Right-handed 310
Helix 19	AC1	C	475	483	Right-handed alpha
Helix 20	AC2	D	529	534	Right-handed alpha
Helix 21	AC3	D	536	543	Right-handed alpha
Helix 22	AC4	D	572	576	Right-handed 310
Helix 23	AC5	D	577	596	Right-handed alpha
Helix 24	AC6	D	618	625	Right-handed alpha
Helix 25	AC7	D	627	635	Right-handed alpha
Helix 26	AC8	D	638	648	Right-handed alpha
Helix 27	AC9	D	652	660	Right-handed alpha
Helix 28	AD1	B	529	537	Right-handed alpha
Helix 29	AD2	B	545	556	Right-handed alpha
Helix 30	AD3	B	569	596	Right-handed alpha
Helix 31	AD4	B	618	624	Right-handed alpha
Helix 32	AD5	B	628	636	Right-handed alpha
Helix 33	AD6	B	638	648	Right-handed alpha
Helix 34	AD7	B	652	664	Right-handed alpha
Helix 35	AD8	F	523	528	Right-handed 310
Helix 36	AD9	F	532	535	Right-handed 310
Helix 37	AE1	F	536	543	Right-handed alpha
Helix 38	AE2	F	577	596	Right-handed alpha
Helix 39	AE3	F	618	623	Right-handed alpha
Helix 40	AE4	F	627	636	Right-handed alpha
Helix 41	AE5	F	638	649	Right-handed alpha
Helix 42	AE6	F	653	658	Right-handed 310
Helix 43	AE7	H	83	87	Right-handed 310
Helix 44	AE8	L	26	30	Right-handed 310
Helix 45	AE9	G	120	134	Right-handed alpha
Helix 46	AF1	K	83	87	Right-handed 310
Helix 47	AF2	N	26	30	Right-handed 310
Helix 48	AF3	I	120	134	Right-handed alpha
Helix 49	AF4	M	83	87	Right-handed 310
Helix 50	AF5	O	26	30	Right-handed 310
Helix 51	AF6	J	120	134	Right-handed alpha
Helix 52	AF7	P	28	32	Right-handed 310
Helix 53	AF8	P	87	91	Right-handed 310

There are 51 sheets in PDB entry 6VPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	242	245	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	486	490	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	155	157	anti-parallel
Strand 3	A	174	176	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	191	193	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	374	377	anti-parallel
Strand 3	A	382	385	anti-parallel
Strand 4	A	413	420	anti-parallel
Strand 5	A	330	334	anti-parallel
Strand 6	A	284	298	anti-parallel
Strand 7	A	443	456	anti-parallel
Strand 8	A	272	273	first strand

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	456	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	467	469	first strand
Strand 5	A	360	361	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	308	first strand
Strand 2	A	316	322	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	45	first strand
Strand 2	E	486	499	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	215	218	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	154	159	anti-parallel
Strand 3	E	172	177	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	183	first strand
Strand 2	E	191	193	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	433	435	parallel
Strand 3	E	423	425	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	449	454	anti-parallel
Strand 3	E	284	287	anti-parallel
Strand 4	E	272	273	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	377	first strand
Strand 2	E	382	385	anti-parallel
Strand 3	E	416	419	anti-parallel
Strand 4	E	330	332	anti-parallel
Strand 5	E	294	302	anti-parallel
Strand 6	E	441	447	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	308	first strand
Strand 2	E	316	320	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	499	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	D	603	609	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	227	anti-parallel
Strand 4	C	243	245	anti-parallel
Strand 5	C	83	85	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	208	209	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	236	237	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	155	156	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	191	193	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	453	456	anti-parallel
Strand 4	C	468	469	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	377	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	414	419	anti-parallel
Strand 4	C	330	333	anti-parallel
Strand 5	C	294	302	anti-parallel
Strand 6	C	441	447	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	312	first strand
Strand 2	C	315	317	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	521	first strand
Strand 2	P	112	114	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	88	98	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	88	98	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	59	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	33	39	anti-parallel
Strand 4	K	88	98	anti-parallel
Strand 5	K	100	103	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	59	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	33	39	anti-parallel
Strand 4	K	88	98	anti-parallel
Strand 5	K	107	109	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	6	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	14	first strand
Strand 2	N	102	107	parallel
Strand 3	N	84	91	anti-parallel
Strand 4	N	34	38	anti-parallel
Strand 5	N	45	48	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	14	first strand
Strand 2	N	102	107	parallel
Strand 3	N	84	91	anti-parallel
Strand 4	N	96	98	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	46	51	anti-parallel
Strand 3	M	33	39	anti-parallel
Strand 4	M	88	98	anti-parallel
Strand 5	M	100	103	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	46	51	anti-parallel
Strand 3	M	33	39	anti-parallel
Strand 4	M	88	98	anti-parallel
Strand 5	M	107	109	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	5	6	first strand
Strand 2	O	19	24	anti-parallel
Strand 3	O	70	75	anti-parallel
Strand 4	O	62	67	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	9	14	first strand
Strand 2	O	102	107	parallel
Strand 3	O	84	91	anti-parallel
Strand 4	O	34	38	anti-parallel
Strand 5	O	45	48	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	9	14	first strand
Strand 2	O	102	107	parallel
Strand 3	O	84	91	anti-parallel
Strand 4	O	96	98	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	5	first strand
Strand 2	P	22	24	anti-parallel
Strand 3	P	78	82	anti-parallel
Strand 4	P	69	73	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	130	133	parallel
Strand 3	P	92	99	anti-parallel
Strand 4	P	34	39	anti-parallel
Strand 5	P	46	51	anti-parallel
Strand 6	P	58	60	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	130	133	parallel
Strand 3	P	92	99	anti-parallel
Strand 4	P	122	125	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	4	7	first strand
Strand 2	Q	19	25	anti-parallel
Strand 3	Q	71	75	anti-parallel
Strand 4	Q	62	66	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	12	first strand
Strand 2	Q	103	105	parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	45	48	first strand
Strand 2	Q	33	38	anti-parallel
Strand 3	Q	85	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VPX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VPX