Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VQ8 entry

There are 34 chains in PDB entry 6VQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 17GLU 616
B
 THR 17GLU 616
C
 THR 17GLU 616
D
 TYR 39ARG 506
E
 TYR 39ARG 506
F
 TYR 39ARG 506
G
 THR 2CYS 376
H
 LYS 4GLU 217
I
 ALA 2ASP 226
J
 LEU 3ASP 226
K
 ALA 2ASP 226
L
 ARG 4PHE 113
M
 SER 3ILE 116
N
 SER 3ILE 116
O
 GLN 4ILE 116
Q
 ILE 4PRO 235
R
 GLY 12PRO 235
S
 GLY 7PRO 218
a
 GLU 3ARG 832
b
 THR 2GLY 204
c
 ALA 412ARG 452
d
 SER 2PHE 351
e
 ALA 3TRP 80
f
 LEU 5ASN 90
g
 ASN 6LYS 155
h
 ASN 6LYS 155
i
 ASN 6LYS 155
j
 ASN 6LYS 155
k
 ASN 6LYS 155
l
 ASN 6LYS 155
m
 ASN 6LYS 155
n
 ASN 6LYS 155
o
 ASN 6LYS 155
p
 PRO 292THR 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are319 helices in PDB entry 6VQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 114Right-handed alpha
Helix 2
AA2
A
255 266Right-handed alpha
Helix 3
AA3
A
280 291Right-handed alpha
Helix 4
AA4
A
292 294Right-handed 310
Helix 5
AA5
A
305 307Right-handed 310
Helix 6
AA6
A
321 340Right-handed alpha
Helix 7
AA7
A
351 365Right-handed alpha
Helix 8
AA8
A
370 374Right-handed 310
Helix 9
AA9
A
375 376Right-handed 310
Helix 10
AB1
A
377 387Right-handed alpha
Helix 11
AB2
A
412 416Right-handed 310
Helix 12
AB3
A
419 427Right-handed alpha
Helix 13
AB4
A
436 442Right-handed alpha
Helix 14
AB5
A
457 469Right-handed alpha
Helix 15
AB6
A
471 497Right-handed alpha
Helix 16
AB7
A
502 519Right-handed alpha
Helix 17
AB8
A
533 557Right-handed alpha
Helix 18
AB9
A
566 574Right-handed alpha
Helix 19
AC1
A
574 584Right-handed alpha
Helix 20
AC2
A
593 616Right-handed alpha
Helix 21
AC3
B
105 114Right-handed alpha
Helix 22
AC4
B
231 236Right-handed alpha
Helix 23
AC5
B
255 267Right-handed alpha
Helix 24
AC6
B
280 291Right-handed alpha
Helix 25
AC7
B
306 309Right-handed 310
Helix 26
AC8
B
319 339Right-handed alpha
Helix 27
AC9
B
351 365Right-handed alpha
Helix 28
AD1
B
370 374Right-handed 310
Helix 29
AD2
B
377 387Right-handed alpha
Helix 30
AD3
B
419 427Right-handed alpha
Helix 31
AD4
B
436 442Right-handed alpha
Helix 32
AD5
B
457 469Right-handed alpha
Helix 33
AD6
B
471 497Right-handed alpha
Helix 34
AD7
B
502 519Right-handed alpha
Helix 35
AD8
B
533 558Right-handed alpha
Helix 36
AD9
B
566 574Right-handed alpha
Helix 37
AE1
B
574 583Right-handed alpha
Helix 38
AE2
B
584 587Right-handed 310
Helix 39
AE3
B
593 616Right-handed alpha
Helix 40
AE4
C
105 113Right-handed alpha
Helix 41
AE5
C
251 255Right-handed 310
Helix 42
AE6
C
256 267Right-handed alpha
Helix 43
AE7
C
280 291Right-handed alpha
Helix 44
AE8
C
319 339Right-handed alpha
Helix 45
AE9
C
350 365Right-handed alpha
Helix 46
AF1
C
370 374Right-handed 310
Helix 47
AF2
C
377 388Right-handed alpha
Helix 48
AF3
C
412 416Right-handed 310
Helix 49
AF4
C
419 427Right-handed alpha
Helix 50
AF5
C
437 442Right-handed alpha
Helix 51
AF6
C
461 469Right-handed alpha
Helix 52
AF7
C
471 489Right-handed alpha
Helix 53
AF8
C
489 497Right-handed alpha
Helix 54
AF9
C
502 519Right-handed alpha
Helix 55
AG1
C
533 557Right-handed alpha
Helix 56
AG2
C
566 574Right-handed alpha
Helix 57
AG3
C
574 583Right-handed alpha
Helix 58
AG4
C
584 587Right-handed 310
Helix 59
AG5
C
593 614Right-handed alpha
Helix 60
AG6
D
124 128Right-handed 310
Helix 61
AG7
D
174 179Right-handed alpha
Helix 62
AG8
D
198 210Right-handed alpha
Helix 63
AG9
D
237 251Right-handed alpha
Helix 64
AH1
D
253 255Right-handed 310
Helix 65
AH2
D
269 272Right-handed 310
Helix 66
AH3
D
273 288Right-handed alpha
Helix 67
AH4
D
299 314Right-handed alpha
Helix 68
AH5
D
326 336Right-handed alpha
Helix 69
AH6
D
357 360Right-handed 310
Helix 70
AH7
D
363 373Right-handed alpha
Helix 71
AH8
D
380 385Right-handed alpha
Helix 72
AH9
D
401 406Right-handed alpha
Helix 73
AI1
D
414 440Right-handed alpha
Helix 74
AI2
D
441 444Right-handed 310
Helix 75
AI3
D
445 462Right-handed alpha
Helix 76
AI4
D
472 485Right-handed alpha
Helix 77
AI5
D
486 487Right-handed 310
Helix 78
AI6
D
488 492Right-handed 310
Helix 79
AI7
D
496 504Right-handed alpha
Helix 80
AI8
E
124 128Right-handed 310
Helix 81
AI9
E
174 179Right-handed alpha
Helix 82
AJ1
E
198 210Right-handed alpha
Helix 83
AJ2
E
237 251Right-handed alpha
Helix 84
AJ3
E
253 255Right-handed 310
Helix 85
AJ4
E
269 272Right-handed 310
Helix 86
AJ5
E
273 288Right-handed alpha
Helix 87
AJ6
E
299 314Right-handed alpha
Helix 88
AJ7
E
319 323Right-handed 310
Helix 89
AJ8
E
326 336Right-handed alpha
Helix 90
AJ9
E
357 360Right-handed 310
Helix 91
AK1
E
363 373Right-handed alpha
Helix 92
AK2
E
381 386Right-handed alpha
Helix 93
AK3
E
401 406Right-handed alpha
Helix 94
AK4
E
414 440Right-handed alpha
Helix 95
AK5
E
441 444Right-handed 310
Helix 96
AK6
E
445 462Right-handed alpha
Helix 97
AK7
E
472 485Right-handed alpha
Helix 98
AK8
E
486 487Right-handed 310
Helix 99
AK9
E
488 492Right-handed 310
Helix 100
AL1
E
496 504Right-handed alpha
Helix 101
AL2
F
159 161Right-handed 310
Helix 102
AL3
F
174 178Right-handed 310
Helix 103
AL4
F
198 210Right-handed alpha
Helix 104
AL5
F
237 251Right-handed alpha
Helix 105
AL6
F
252 255Right-handed 310
Helix 106
AL7
F
267 289Right-handed alpha
Helix 107
AL8
F
299 314Right-handed alpha
Helix 108
AL9
F
319 323Right-handed 310
Helix 109
AM1
F
326 336Right-handed alpha
Helix 110
AM2
F
357 360Right-handed 310
Helix 111
AM3
F
363 371Right-handed alpha
Helix 112
AM4
F
381 386Right-handed alpha
Helix 113
AM5
F
401 406Right-handed alpha
Helix 114
AM6
F
414 440Right-handed alpha
Helix 115
AM7
F
445 462Right-handed alpha
Helix 116
AM8
F
472 485Right-handed alpha
Helix 117
AM9
F
486 487Right-handed 310
Helix 118
AN1
F
488 492Right-handed 310
Helix 119
AN2
F
496 504Right-handed alpha
Helix 120
AN3
G
14 22Right-handed alpha
Helix 121
AN4
G
27 32Right-handed 310
Helix 122
AN5
G
47 80Right-handed alpha
Helix 123
AN6
G
97 104Right-handed alpha
Helix 124
AN7
G
117 157Right-handed alpha
Helix 125
AN8
G
165 169Right-handed 310
Helix 126
AN9
G
171 175Right-handed 310
Helix 127
AO1
G
193 201Right-handed alpha
Helix 128
AO2
G
202 204Right-handed 310
Helix 129
AO3
G
233 244Right-handed alpha
Helix 130
AO4
G
254 311Right-handed alpha
Helix 131
AO5
G
327 341Right-handed alpha
Helix 132
AO6
H
12 77Right-handed alpha
Helix 133
AO7
H
79 86Right-handed alpha
Helix 134
AO8
H
127 175Right-handed alpha
Helix 135
AO9
H
175 217Right-handed alpha
Helix 136
AP1
I
4 107Right-handed alpha
Helix 137
AP2
I
108 128Right-handed alpha
Helix 138
AP3
I
137 139Right-handed 310
Helix 139
AP4
I
140 159Right-handed alpha
Helix 140
AP5
I
196 217Right-handed alpha
Helix 141
AP6
J
4 107Right-handed alpha
Helix 142
AP7
J
109 128Right-handed alpha
Helix 143
AP8
J
137 139Right-handed 310
Helix 144
AP9
J
140 160Right-handed alpha
Helix 145
AQ1
J
196 205Right-handed alpha
Helix 146
AQ2
J
207 217Right-handed alpha
Helix 147
AQ3
K
4 107Right-handed alpha
Helix 148
AQ4
K
109 128Right-handed alpha
Helix 149
AQ5
K
137 139Right-handed 310
Helix 150
AQ6
K
140 160Right-handed alpha
Helix 151
AQ7
K
195 207Right-handed alpha
Helix 152
AQ8
K
207 217Right-handed alpha
Helix 153
AQ9
L
13 23Right-handed alpha
Helix 154
AR1
L
44 57Right-handed alpha
Helix 155
AR2
L
68 74Right-handed alpha
Helix 156
AR3
L
74 81Right-handed alpha
Helix 157
AR4
L
103 109Right-handed alpha
Helix 158
AR5
M
4 89Right-handed alpha
Helix 159
AR6
M
91 105Right-handed alpha
Helix 160
AR7
N
4 104Right-handed alpha
Helix 161
AR8
O
5 91Right-handed alpha
Helix 162
AR9
O
91 105Right-handed alpha
Helix 163
AS1
Q
14 37Right-handed alpha
Helix 164
AS2
Q
42 49Right-handed alpha
Helix 165
AS3
Q
49 54Right-handed alpha
Helix 166
AS4
Q
61 71Right-handed alpha
Helix 167
AS5
Q
77 97Right-handed alpha
Helix 168
AS6
Q
104 117Right-handed alpha
Helix 169
AS7
Q
124 140Right-handed alpha
Helix 170
AS8
Q
146 167Right-handed alpha
Helix 171
AS9
Q
172 188Right-handed alpha
Helix 172
AT1
Q
192 205Right-handed alpha
Helix 173
AT2
Q
218 233Right-handed alpha
Helix 174
AT3
R
14 37Right-handed alpha
Helix 175
AT4
R
42 48Right-handed alpha
Helix 176
AT5
R
49 54Right-handed alpha
Helix 177
AT6
R
61 71Right-handed alpha
Helix 178
AT7
R
77 97Right-handed alpha
Helix 179
AT8
R
104 118Right-handed alpha
Helix 180
AT9
R
120 123Right-handed 310
Helix 181
AU1
R
124 142Right-handed alpha
Helix 182
AU2
R
146 167Right-handed alpha
Helix 183
AU3
R
172 187Right-handed alpha
Helix 184
AU4
R
192 206Right-handed alpha
Helix 185
AU5
R
218 234Right-handed alpha
Helix 186
AU6
S
14 37Right-handed alpha
Helix 187
AU7
S
42 49Right-handed alpha
Helix 188
AU8
S
49 54Right-handed alpha
Helix 189
AU9
S
62 72Right-handed alpha
Helix 190
AV1
S
77 97Right-handed alpha
Helix 191
AV2
S
104 117Right-handed alpha
Helix 192
AV3
S
120 123Right-handed 310
Helix 193
AV4
S
124 140Right-handed alpha
Helix 194
AV5
S
141 143Right-handed 310
Helix 195
AV6
S
146 167Right-handed alpha
Helix 196
AV7
S
172 187Right-handed alpha
Helix 197
AV8
S
193 207Right-handed alpha
Helix 198
AV9
a
19 33Right-handed alpha
Helix 199
AW1
a
45 50Right-handed alpha
Helix 200
AW2
a
51 75Right-handed alpha
Helix 201
AW3
a
84 88Right-handed 310
Helix 202
AW4
a
93 132Right-handed alpha
Helix 203
AW5
a
179 191Right-handed alpha
Helix 204
AW6
a
226 240Right-handed alpha
Helix 205
AW7
a
251 309Right-handed alpha
Helix 206
AW8
a
326 344Right-handed alpha
Helix 207
AW9
a
370 380Right-handed alpha
Helix 208
AX1
a
391 407Right-handed alpha
Helix 209
AX2
a
409 426Right-handed alpha
Helix 210
AX3
a
426 432Right-handed alpha
Helix 211
AX4
a
437 446Right-handed alpha
Helix 212
AX5
a
446 465Right-handed alpha
Helix 213
AX6
a
481 488Right-handed alpha
Helix 214
AX7
a
492 497Right-handed alpha
Helix 215
AX8
a
498 500Right-handed 310
Helix 216
AX9
a
520 526Right-handed 310
Helix 217
AY1
a
528 563Right-handed alpha
Helix 218
AY2
a
565 571Right-handed alpha
Helix 219
AY3
a
572 598Right-handed alpha
Helix 220
AY4
a
599 603Right-handed 310
Helix 221
AY5
a
608 619Right-handed alpha
Helix 222
AY6
a
632 647Right-handed alpha
Helix 223
AY7
a
647 667Right-handed alpha
Helix 224
AY8
a
713 739Right-handed alpha
Helix 225
AY9
a
739 759Right-handed alpha
Helix 226
AZ1
a
761 765Right-handed 310
Helix 227
AZ2
a
768 791Right-handed alpha
Helix 228
AZ3
a
793 810Right-handed alpha
Helix 229
AZ4
a
811 815Right-handed 310
Helix 230
AZ5
b
3 29Right-handed alpha
Helix 231
AZ6
b
36 44Right-handed alpha
Helix 232
AZ7
b
45 80Right-handed alpha
Helix 233
AZ8
b
81 82Right-handed 310
Helix 234
AZ9
b
83 84Right-handed 310
Helix 235
BA1
b
85 90Right-handed alpha
Helix 236
BA2
b
91 113Right-handed alpha
Helix 237
BA3
b
127 169Right-handed alpha
Helix 238
BA4
b
172 198Right-handed alpha
Helix 239
BA5
c
416 442Right-handed alpha
Helix 240
BA6
d
8 25Right-handed alpha
Helix 241
BA7
d
29 38Right-handed alpha
Helix 242
BA8
d
41 50Right-handed alpha
Helix 243
BA9
d
66 88Right-handed alpha
Helix 244
BB1
d
90 116Right-handed alpha
Helix 245
BB2
d
121 126Right-handed alpha
Helix 246
BB3
d
127 129Right-handed 310
Helix 247
BB4
d
146 157Right-handed alpha
Helix 248
BB5
d
158 167Right-handed 310
Helix 249
BB6
d
170 176Right-handed alpha
Helix 250
BB7
d
177 200Right-handed alpha
Helix 251
BB8
d
202 227Right-handed alpha
Helix 252
BB9
d
228 230Right-handed 310
Helix 253
BC1
d
233 240Right-handed alpha
Helix 254
BC2
d
251 258Right-handed alpha
Helix 255
BC3
d
260 269Right-handed alpha
Helix 256
BC4
d
271 281Right-handed alpha
Helix 257
BC5
d
289 305Right-handed alpha
Helix 258
BC6
d
306 308Right-handed 310
Helix 259
BC7
d
312 338Right-handed alpha
Helix 260
BC8
d
340 344Right-handed 310
Helix 261
BC9
e
6 23Right-handed alpha
Helix 262
BD1
e
24 27Right-handed 310
Helix 263
BD2
e
33 58Right-handed alpha
Helix 264
BD3
e
69 78Right-handed alpha
Helix 265
BD4
f
8 36Right-handed alpha
Helix 266
BD5
f
54 90Right-handed alpha
Helix 267
BD6
g
10 46Right-handed alpha
Helix 268
BD7
g
48 52Right-handed 310
Helix 269
BD8
g
53 55Right-handed 310
Helix 270
BD9
g
56 78Right-handed alpha
Helix 271
BE1
g
86 124Right-handed alpha
Helix 272
BE2
g
127 153Right-handed alpha
Helix 273
BE3
h
11 46Right-handed alpha
Helix 274
BE4
h
48 52Right-handed 310
Helix 275
BE5
h
56 78Right-handed alpha
Helix 276
BE6
h
86 124Right-handed alpha
Helix 277
BE7
h
126 154Right-handed alpha
Helix 278
BE8
i
10 48Right-handed alpha
Helix 279
BE9
i
49 52Right-handed 310
Helix 280
BF1
i
56 78Right-handed alpha
Helix 281
BF2
i
86 124Right-handed alpha
Helix 282
BF3
i
126 154Right-handed alpha
Helix 283
BF4
j
11 48Right-handed alpha
Helix 284
BF5
j
49 52Right-handed 310
Helix 285
BF6
j
53 55Right-handed 310
Helix 286
BF7
j
56 78Right-handed alpha
Helix 287
BF8
j
86 124Right-handed alpha
Helix 288
BF9
j
126 154Right-handed alpha
Helix 289
BG1
k
10 48Right-handed alpha
Helix 290
BG2
k
49 52Right-handed 310
Helix 291
BG3
k
53 55Right-handed 310
Helix 292
BG4
k
56 80Right-handed alpha
Helix 293
BG5
k
86 124Right-handed alpha
Helix 294
BG6
k
127 154Right-handed alpha
Helix 295
BG7
l
11 48Right-handed alpha
Helix 296
BG8
l
49 52Right-handed 310
Helix 297
BG9
l
53 55Right-handed 310
Helix 298
BH1
l
56 80Right-handed alpha
Helix 299
BH2
l
86 124Right-handed alpha
Helix 300
BH3
l
126 155Right-handed alpha
Helix 301
BH4
m
10 45Right-handed alpha
Helix 302
BH5
m
46 47Right-handed 310
Helix 303
BH6
m
48 55Right-handed 310
Helix 304
BH7
m
56 80Right-handed alpha
Helix 305
BH8
m
86 124Right-handed alpha
Helix 306
BH9
m
126 154Right-handed alpha
Helix 307
BI1
n
11 46Right-handed alpha
Helix 308
BI2
n
48 52Right-handed 310
Helix 309
BI3
n
56 79Right-handed alpha
Helix 310
BI4
n
86 124Right-handed alpha
Helix 311
BI5
n
126 154Right-handed alpha
Helix 312
BI6
o
10 48Right-handed alpha
Helix 313
BI7
o
49 52Right-handed 310
Helix 314
BI8
o
53 55Right-handed 310
Helix 315
BI9
o
56 80Right-handed alpha
Helix 316
BJ1
o
86 124Right-handed alpha
Helix 317
BJ2
o
127 154Right-handed alpha
Helix 318
BJ3
p
302 330Right-handed alpha
Helix 319
BJ4
p
338 343Right-handed alpha
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