Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VQA entry

There are 16 chains in PDB entry 6VQA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 17GLU 616
B
 THR 17GLU 616
C
 THR 17GLU 616
D
 TYR 39ARG 506
E
 TYR 39ARG 506
F
 TYR 39ARG 506
H
 LYS 4GLU 217
I
 GLN 66ASP 226
J
 GLN 66ASP 226
K
 GLN 66ASP 226
M
 SER 70ILE 116
N
 SER 70ILE 116
O
 SER 70ILE 116
Q
 GLY 7PRO 218
R
 ILE 4PRO 235
S
 GLY 12PRO 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are178 helices in PDB entry 6VQA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 113Right-handed alpha
Helix 2
AA2
A
251 255Right-handed 310
Helix 3
AA3
A
256 267Right-handed alpha
Helix 4
AA4
A
280 291Right-handed alpha
Helix 5
AA5
A
319 339Right-handed alpha
Helix 6
AA6
A
350 365Right-handed alpha
Helix 7
AA7
A
370 374Right-handed 310
Helix 8
AA8
A
377 388Right-handed alpha
Helix 9
AA9
A
412 416Right-handed 310
Helix 10
AB1
A
419 427Right-handed alpha
Helix 11
AB2
A
437 442Right-handed alpha
Helix 12
AB3
A
461 469Right-handed alpha
Helix 13
AB4
A
471 489Right-handed alpha
Helix 14
AB5
A
489 497Right-handed alpha
Helix 15
AB6
A
502 519Right-handed alpha
Helix 16
AB7
A
533 557Right-handed alpha
Helix 17
AB8
A
566 574Right-handed alpha
Helix 18
AB9
A
574 584Right-handed alpha
Helix 19
AC1
A
585 587Right-handed 310
Helix 20
AC2
A
593 614Right-handed alpha
Helix 21
AC3
B
105 114Right-handed alpha
Helix 22
AC4
B
255 266Right-handed alpha
Helix 23
AC5
B
280 291Right-handed alpha
Helix 24
AC6
B
292 294Right-handed 310
Helix 25
AC7
B
305 307Right-handed 310
Helix 26
AC8
B
321 340Right-handed alpha
Helix 27
AC9
B
351 365Right-handed alpha
Helix 28
AD1
B
370 374Right-handed 310
Helix 29
AD2
B
375 376Right-handed 310
Helix 30
AD3
B
377 387Right-handed alpha
Helix 31
AD4
B
412 416Right-handed 310
Helix 32
AD5
B
419 427Right-handed alpha
Helix 33
AD6
B
436 442Right-handed alpha
Helix 34
AD7
B
457 469Right-handed alpha
Helix 35
AD8
B
471 497Right-handed alpha
Helix 36
AD9
B
502 519Right-handed alpha
Helix 37
AE1
B
533 557Right-handed alpha
Helix 38
AE2
B
566 574Right-handed alpha
Helix 39
AE3
B
574 584Right-handed alpha
Helix 40
AE4
B
593 616Right-handed alpha
Helix 41
AE5
C
105 114Right-handed alpha
Helix 42
AE6
C
231 236Right-handed alpha
Helix 43
AE7
C
255 267Right-handed alpha
Helix 44
AE8
C
280 291Right-handed alpha
Helix 45
AE9
C
319 339Right-handed alpha
Helix 46
AF1
C
351 365Right-handed alpha
Helix 47
AF2
C
370 374Right-handed 310
Helix 48
AF3
C
377 387Right-handed alpha
Helix 49
AF4
C
419 427Right-handed alpha
Helix 50
AF5
C
436 442Right-handed alpha
Helix 51
AF6
C
457 469Right-handed alpha
Helix 52
AF7
C
471 497Right-handed alpha
Helix 53
AF8
C
502 519Right-handed alpha
Helix 54
AF9
C
533 558Right-handed alpha
Helix 55
AG1
C
566 574Right-handed alpha
Helix 56
AG2
C
574 583Right-handed alpha
Helix 57
AG3
C
584 588Right-handed 310
Helix 58
AG4
C
593 616Right-handed alpha
Helix 59
AG5
D
159 161Right-handed 310
Helix 60
AG6
D
174 178Right-handed 310
Helix 61
AG7
D
198 210Right-handed alpha
Helix 62
AG8
D
237 251Right-handed alpha
Helix 63
AG9
D
252 255Right-handed 310
Helix 64
AH1
D
269 289Right-handed alpha
Helix 65
AH2
D
299 314Right-handed alpha
Helix 66
AH3
D
319 323Right-handed 310
Helix 67
AH4
D
326 336Right-handed alpha
Helix 68
AH5
D
357 360Right-handed 310
Helix 69
AH6
D
363 371Right-handed alpha
Helix 70
AH7
D
381 386Right-handed alpha
Helix 71
AH8
D
401 406Right-handed alpha
Helix 72
AH9
D
414 440Right-handed alpha
Helix 73
AI1
D
445 462Right-handed alpha
Helix 74
AI2
D
472 485Right-handed alpha
Helix 75
AI3
D
486 487Right-handed 310
Helix 76
AI4
D
488 492Right-handed 310
Helix 77
AI5
D
496 504Right-handed alpha
Helix 78
AI6
E
124 128Right-handed 310
Helix 79
AI7
E
174 179Right-handed alpha
Helix 80
AI8
E
198 210Right-handed alpha
Helix 81
AI9
E
237 251Right-handed alpha
Helix 82
AJ1
E
253 255Right-handed 310
Helix 83
AJ2
E
269 272Right-handed 310
Helix 84
AJ3
E
273 288Right-handed alpha
Helix 85
AJ4
E
299 314Right-handed alpha
Helix 86
AJ5
E
326 336Right-handed alpha
Helix 87
AJ6
E
357 360Right-handed 310
Helix 88
AJ7
E
363 373Right-handed alpha
Helix 89
AJ8
E
380 385Right-handed alpha
Helix 90
AJ9
E
401 406Right-handed alpha
Helix 91
AK1
E
414 440Right-handed alpha
Helix 92
AK2
E
441 444Right-handed 310
Helix 93
AK3
E
445 462Right-handed alpha
Helix 94
AK4
E
472 485Right-handed alpha
Helix 95
AK5
E
486 487Right-handed 310
Helix 96
AK6
E
488 492Right-handed 310
Helix 97
AK7
E
496 504Right-handed alpha
Helix 98
AK8
F
124 128Right-handed 310
Helix 99
AK9
F
174 179Right-handed alpha
Helix 100
AL1
F
198 210Right-handed alpha
Helix 101
AL2
F
237 251Right-handed alpha
Helix 102
AL3
F
253 255Right-handed 310
Helix 103
AL4
F
269 272Right-handed 310
Helix 104
AL5
F
273 288Right-handed alpha
Helix 105
AL6
F
299 314Right-handed alpha
Helix 106
AL7
F
319 323Right-handed 310
Helix 107
AL8
F
326 336Right-handed alpha
Helix 108
AL9
F
357 360Right-handed 310
Helix 109
AM1
F
363 373Right-handed alpha
Helix 110
AM2
F
381 386Right-handed alpha
Helix 111
AM3
F
401 406Right-handed alpha
Helix 112
AM4
F
414 440Right-handed alpha
Helix 113
AM5
F
441 444Right-handed 310
Helix 114
AM6
F
445 462Right-handed alpha
Helix 115
AM7
F
472 485Right-handed alpha
Helix 116
AM8
F
486 487Right-handed 310
Helix 117
AM9
F
488 492Right-handed 310
Helix 118
AN1
F
496 504Right-handed alpha
Helix 119
AN2
H
12 48Right-handed alpha
Helix 120
AN3
H
155 175Right-handed alpha
Helix 121
AN4
H
175 216Right-handed alpha
Helix 122
AN5
I
67 107Right-handed alpha
Helix 123
AN6
I
109 128Right-handed alpha
Helix 124
AN7
I
137 139Right-handed 310
Helix 125
AN8
I
140 160Right-handed alpha
Helix 126
AN9
I
195 207Right-handed alpha
Helix 127
AO1
I
207 217Right-handed alpha
Helix 128
AO2
J
67 107Right-handed alpha
Helix 129
AO3
J
108 128Right-handed alpha
Helix 130
AO4
J
137 139Right-handed 310
Helix 131
AO5
J
140 159Right-handed alpha
Helix 132
AO6
J
195 217Right-handed alpha
Helix 133
AO7
K
67 107Right-handed alpha
Helix 134
AO8
K
109 128Right-handed alpha
Helix 135
AO9
K
137 139Right-handed 310
Helix 136
AP1
K
140 160Right-handed alpha
Helix 137
AP2
K
196 205Right-handed alpha
Helix 138
AP3
K
207 217Right-handed alpha
Helix 139
AP4
M
71 91Right-handed alpha
Helix 140
AP5
M
91 105Right-handed alpha
Helix 141
AP6
N
71 89Right-handed alpha
Helix 142
AP7
N
91 105Right-handed alpha
Helix 143
AP8
O
71 104Right-handed alpha
Helix 144
AP9
Q
14 37Right-handed alpha
Helix 145
AQ1
Q
42 49Right-handed alpha
Helix 146
AQ2
Q
49 54Right-handed alpha
Helix 147
AQ3
Q
62 72Right-handed alpha
Helix 148
AQ4
Q
77 97Right-handed alpha
Helix 149
AQ5
Q
104 117Right-handed alpha
Helix 150
AQ6
Q
120 123Right-handed 310
Helix 151
AQ7
Q
124 140Right-handed alpha
Helix 152
AQ8
Q
141 143Right-handed 310
Helix 153
AQ9
Q
146 167Right-handed alpha
Helix 154
AR1
Q
172 187Right-handed alpha
Helix 155
AR2
Q
193 207Right-handed alpha
Helix 156
AR3
R
14 37Right-handed alpha
Helix 157
AR4
R
42 49Right-handed alpha
Helix 158
AR5
R
49 54Right-handed alpha
Helix 159
AR6
R
61 71Right-handed alpha
Helix 160
AR7
R
77 97Right-handed alpha
Helix 161
AR8
R
104 117Right-handed alpha
Helix 162
AR9
R
124 140Right-handed alpha
Helix 163
AS1
R
146 167Right-handed alpha
Helix 164
AS2
R
172 188Right-handed alpha
Helix 165
AS3
R
192 205Right-handed alpha
Helix 166
AS4
R
218 233Right-handed alpha
Helix 167
AS5
S
14 37Right-handed alpha
Helix 168
AS6
S
42 48Right-handed alpha
Helix 169
AS7
S
49 54Right-handed alpha
Helix 170
AS8
S
61 71Right-handed alpha
Helix 171
AS9
S
77 97Right-handed alpha
Helix 172
AT1
S
104 118Right-handed alpha
Helix 173
AT2
S
120 123Right-handed 310
Helix 174
AT3
S
124 142Right-handed alpha
Helix 175
AT4
S
146 167Right-handed alpha
Helix 176
AT5
S
172 187Right-handed alpha
Helix 177
AT6
S
192 206Right-handed alpha
Helix 178
AT7
S
218 234Right-handed alpha
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