Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VQB entry

There are 16 chains in PDB entry 6VQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 17GLU 616
B
 THR 17GLU 616
C
 THR 17GLU 616
D
 TYR 39ARG 506
E
 TYR 39ARG 506
F
 TYR 39ARG 506
H
 LYS 4GLU 217
I
 GLN 66ASP 226
J
 GLN 66ASP 226
K
 GLN 66ASP 226
M
 SER 70ILE 116
N
 SER 70ILE 116
O
 SER 70ILE 116
Q
 ILE 4PRO 235
R
 GLY 12PRO 235
S
 GLY 7PRO 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are179 helices in PDB entry 6VQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 114Right-handed alpha
Helix 2
AA2
A
255 266Right-handed alpha
Helix 3
AA3
A
280 291Right-handed alpha
Helix 4
AA4
A
292 294Right-handed 310
Helix 5
AA5
A
305 307Right-handed 310
Helix 6
AA6
A
321 340Right-handed alpha
Helix 7
AA7
A
351 365Right-handed alpha
Helix 8
AA8
A
370 374Right-handed 310
Helix 9
AA9
A
375 376Right-handed 310
Helix 10
AB1
A
377 387Right-handed alpha
Helix 11
AB2
A
412 416Right-handed 310
Helix 12
AB3
A
419 427Right-handed alpha
Helix 13
AB4
A
436 442Right-handed alpha
Helix 14
AB5
A
457 469Right-handed alpha
Helix 15
AB6
A
471 497Right-handed alpha
Helix 16
AB7
A
502 519Right-handed alpha
Helix 17
AB8
A
533 557Right-handed alpha
Helix 18
AB9
A
566 574Right-handed alpha
Helix 19
AC1
A
574 584Right-handed alpha
Helix 20
AC2
A
593 616Right-handed alpha
Helix 21
AC3
B
105 114Right-handed alpha
Helix 22
AC4
B
231 236Right-handed alpha
Helix 23
AC5
B
255 267Right-handed alpha
Helix 24
AC6
B
280 291Right-handed alpha
Helix 25
AC7
B
306 309Right-handed 310
Helix 26
AC8
B
319 339Right-handed alpha
Helix 27
AC9
B
351 365Right-handed alpha
Helix 28
AD1
B
370 374Right-handed 310
Helix 29
AD2
B
377 387Right-handed alpha
Helix 30
AD3
B
419 427Right-handed alpha
Helix 31
AD4
B
436 442Right-handed alpha
Helix 32
AD5
B
457 469Right-handed alpha
Helix 33
AD6
B
471 497Right-handed alpha
Helix 34
AD7
B
502 519Right-handed alpha
Helix 35
AD8
B
533 558Right-handed alpha
Helix 36
AD9
B
566 574Right-handed alpha
Helix 37
AE1
B
574 583Right-handed alpha
Helix 38
AE2
B
584 587Right-handed 310
Helix 39
AE3
B
593 616Right-handed alpha
Helix 40
AE4
C
105 113Right-handed alpha
Helix 41
AE5
C
251 255Right-handed 310
Helix 42
AE6
C
256 267Right-handed alpha
Helix 43
AE7
C
280 291Right-handed alpha
Helix 44
AE8
C
319 339Right-handed alpha
Helix 45
AE9
C
350 365Right-handed alpha
Helix 46
AF1
C
370 374Right-handed 310
Helix 47
AF2
C
377 388Right-handed alpha
Helix 48
AF3
C
412 416Right-handed 310
Helix 49
AF4
C
419 427Right-handed alpha
Helix 50
AF5
C
437 442Right-handed alpha
Helix 51
AF6
C
461 469Right-handed alpha
Helix 52
AF7
C
471 489Right-handed alpha
Helix 53
AF8
C
489 497Right-handed alpha
Helix 54
AF9
C
502 519Right-handed alpha
Helix 55
AG1
C
533 557Right-handed alpha
Helix 56
AG2
C
566 574Right-handed alpha
Helix 57
AG3
C
574 583Right-handed alpha
Helix 58
AG4
C
584 587Right-handed 310
Helix 59
AG5
C
593 614Right-handed alpha
Helix 60
AG6
D
124 128Right-handed 310
Helix 61
AG7
D
174 179Right-handed alpha
Helix 62
AG8
D
198 210Right-handed alpha
Helix 63
AG9
D
237 251Right-handed alpha
Helix 64
AH1
D
253 255Right-handed 310
Helix 65
AH2
D
269 272Right-handed 310
Helix 66
AH3
D
273 288Right-handed alpha
Helix 67
AH4
D
299 314Right-handed alpha
Helix 68
AH5
D
326 336Right-handed alpha
Helix 69
AH6
D
357 360Right-handed 310
Helix 70
AH7
D
363 373Right-handed alpha
Helix 71
AH8
D
380 385Right-handed alpha
Helix 72
AH9
D
401 406Right-handed alpha
Helix 73
AI1
D
414 440Right-handed alpha
Helix 74
AI2
D
441 444Right-handed 310
Helix 75
AI3
D
445 462Right-handed alpha
Helix 76
AI4
D
472 485Right-handed alpha
Helix 77
AI5
D
486 487Right-handed 310
Helix 78
AI6
D
488 492Right-handed 310
Helix 79
AI7
D
496 504Right-handed alpha
Helix 80
AI8
E
124 128Right-handed 310
Helix 81
AI9
E
174 179Right-handed alpha
Helix 82
AJ1
E
198 210Right-handed alpha
Helix 83
AJ2
E
237 251Right-handed alpha
Helix 84
AJ3
E
253 255Right-handed 310
Helix 85
AJ4
E
269 272Right-handed 310
Helix 86
AJ5
E
273 288Right-handed alpha
Helix 87
AJ6
E
299 314Right-handed alpha
Helix 88
AJ7
E
319 323Right-handed 310
Helix 89
AJ8
E
326 336Right-handed alpha
Helix 90
AJ9
E
357 360Right-handed 310
Helix 91
AK1
E
363 373Right-handed alpha
Helix 92
AK2
E
381 386Right-handed alpha
Helix 93
AK3
E
401 406Right-handed alpha
Helix 94
AK4
E
414 440Right-handed alpha
Helix 95
AK5
E
441 444Right-handed 310
Helix 96
AK6
E
445 462Right-handed alpha
Helix 97
AK7
E
472 485Right-handed alpha
Helix 98
AK8
E
486 487Right-handed 310
Helix 99
AK9
E
488 492Right-handed 310
Helix 100
AL1
E
496 504Right-handed alpha
Helix 101
AL2
F
159 161Right-handed 310
Helix 102
AL3
F
174 178Right-handed 310
Helix 103
AL4
F
198 210Right-handed alpha
Helix 104
AL5
F
237 251Right-handed alpha
Helix 105
AL6
F
252 255Right-handed 310
Helix 106
AL7
F
267 289Right-handed alpha
Helix 107
AL8
F
299 314Right-handed alpha
Helix 108
AL9
F
319 323Right-handed 310
Helix 109
AM1
F
326 336Right-handed alpha
Helix 110
AM2
F
357 360Right-handed 310
Helix 111
AM3
F
363 371Right-handed alpha
Helix 112
AM4
F
381 386Right-handed alpha
Helix 113
AM5
F
401 406Right-handed alpha
Helix 114
AM6
F
414 440Right-handed alpha
Helix 115
AM7
F
445 462Right-handed alpha
Helix 116
AM8
F
472 485Right-handed alpha
Helix 117
AM9
F
486 487Right-handed 310
Helix 118
AN1
F
488 492Right-handed 310
Helix 119
AN2
F
496 504Right-handed alpha
Helix 120
AN3
H
12 48Right-handed alpha
Helix 121
AN4
H
155 175Right-handed alpha
Helix 122
AN5
H
175 217Right-handed alpha
Helix 123
AN6
I
67 107Right-handed alpha
Helix 124
AN7
I
108 128Right-handed alpha
Helix 125
AN8
I
137 139Right-handed 310
Helix 126
AN9
I
140 159Right-handed alpha
Helix 127
AO1
I
196 217Right-handed alpha
Helix 128
AO2
J
67 107Right-handed alpha
Helix 129
AO3
J
109 128Right-handed alpha
Helix 130
AO4
J
137 139Right-handed 310
Helix 131
AO5
J
140 160Right-handed alpha
Helix 132
AO6
J
196 205Right-handed alpha
Helix 133
AO7
J
207 217Right-handed alpha
Helix 134
AO8
K
67 107Right-handed alpha
Helix 135
AO9
K
109 128Right-handed alpha
Helix 136
AP1
K
137 139Right-handed 310
Helix 137
AP2
K
140 160Right-handed alpha
Helix 138
AP3
K
195 207Right-handed alpha
Helix 139
AP4
K
207 217Right-handed alpha
Helix 140
AP5
M
71 89Right-handed alpha
Helix 141
AP6
M
91 105Right-handed alpha
Helix 142
AP7
N
71 104Right-handed alpha
Helix 143
AP8
O
71 91Right-handed alpha
Helix 144
AP9
O
91 105Right-handed alpha
Helix 145
AQ1
Q
14 37Right-handed alpha
Helix 146
AQ2
Q
42 49Right-handed alpha
Helix 147
AQ3
Q
49 54Right-handed alpha
Helix 148
AQ4
Q
61 71Right-handed alpha
Helix 149
AQ5
Q
77 97Right-handed alpha
Helix 150
AQ6
Q
104 117Right-handed alpha
Helix 151
AQ7
Q
124 140Right-handed alpha
Helix 152
AQ8
Q
146 167Right-handed alpha
Helix 153
AQ9
Q
172 188Right-handed alpha
Helix 154
AR1
Q
192 205Right-handed alpha
Helix 155
AR2
Q
218 233Right-handed alpha
Helix 156
AR3
R
14 37Right-handed alpha
Helix 157
AR4
R
42 48Right-handed alpha
Helix 158
AR5
R
49 54Right-handed alpha
Helix 159
AR6
R
61 71Right-handed alpha
Helix 160
AR7
R
77 97Right-handed alpha
Helix 161
AR8
R
104 118Right-handed alpha
Helix 162
AR9
R
120 123Right-handed 310
Helix 163
AS1
R
124 142Right-handed alpha
Helix 164
AS2
R
146 167Right-handed alpha
Helix 165
AS3
R
172 187Right-handed alpha
Helix 166
AS4
R
192 206Right-handed alpha
Helix 167
AS5
R
218 234Right-handed alpha
Helix 168
AS6
S
14 37Right-handed alpha
Helix 169
AS7
S
42 49Right-handed alpha
Helix 170
AS8
S
49 54Right-handed alpha
Helix 171
AS9
S
62 72Right-handed alpha
Helix 172
AT1
S
77 97Right-handed alpha
Helix 173
AT2
S
104 117Right-handed alpha
Helix 174
AT3
S
120 123Right-handed 310
Helix 175
AT4
S
124 140Right-handed alpha
Helix 176
AT5
S
141 143Right-handed 310
Helix 177
AT6
S
146 167Right-handed alpha
Helix 178
AT7
S
172 187Right-handed alpha
Helix 179
AT8
S
193 207Right-handed alpha
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