Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VQC entry

There are 18 chains in PDB entry 6VQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 LYS 50THR 153
L
 ARG 4PHE 113
a
 GLU 3GLU 833
b
 THR 2GLY 204
c
 ALA 412ARG 452
d
 SER 2PHE 351
e
 ALA 3TRP 80
f
 LEU 5ASN 90
g
 ASN 6LYS 155
h
 ASN 6LYS 155
i
 ASN 6LYS 155
j
 ASN 6LYS 155
k
 ASN 6LYS 155
l
 ASN 6LYS 155
m
 ASN 6LYS 155
n
 ASN 6LYS 155
o
 ASN 6LYS 155
p
 PRO 292THR 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are117 helices in PDB entry 6VQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
50 77Right-handed alpha
Helix 2
AA2
H
79 86Right-handed alpha
Helix 3
AA3
H
127 153Right-handed alpha
Helix 4
AA4
L
13 23Right-handed alpha
Helix 5
AA5
L
44 57Right-handed alpha
Helix 6
AA6
L
68 74Right-handed alpha
Helix 7
AA7
L
75 81Right-handed alpha
Helix 8
AA8
L
103 109Right-handed alpha
Helix 9
AA9
a
370 380Right-handed alpha
Helix 10
AB1
a
391 407Right-handed alpha
Helix 11
AB2
a
409 426Right-handed alpha
Helix 12
AB3
a
426 432Right-handed alpha
Helix 13
AB4
a
437 446Right-handed alpha
Helix 14
AB5
a
446 465Right-handed alpha
Helix 15
AB6
a
481 488Right-handed alpha
Helix 16
AB7
a
495 500Right-handed 310
Helix 17
AB8
a
520 526Right-handed 310
Helix 18
AB9
a
528 563Right-handed alpha
Helix 19
AC1
a
565 571Right-handed alpha
Helix 20
AC2
a
572 598Right-handed alpha
Helix 21
AC3
a
599 603Right-handed 310
Helix 22
AC4
a
608 619Right-handed alpha
Helix 23
AC5
a
632 667Right-handed alpha
Helix 24
AC6
a
713 739Right-handed alpha
Helix 25
AC7
a
739 759Right-handed alpha
Helix 26
AC8
a
761 765Right-handed 310
Helix 27
AC9
a
768 791Right-handed alpha
Helix 28
AD1
a
793 810Right-handed alpha
Helix 29
AD2
a
811 815Right-handed 310
Helix 30
AD3
b
3 29Right-handed alpha
Helix 31
AD4
b
36 44Right-handed alpha
Helix 32
AD5
b
45 80Right-handed alpha
Helix 33
AD6
b
81 82Right-handed 310
Helix 34
AD7
b
83 84Right-handed 310
Helix 35
AD8
b
85 90Right-handed alpha
Helix 36
AD9
b
91 113Right-handed alpha
Helix 37
AE1
b
127 169Right-handed alpha
Helix 38
AE2
b
172 198Right-handed alpha
Helix 39
AE3
c
416 442Right-handed alpha
Helix 40
AE4
d
8 25Right-handed alpha
Helix 41
AE5
d
29 38Right-handed alpha
Helix 42
AE6
d
41 50Right-handed alpha
Helix 43
AE7
d
66 88Right-handed alpha
Helix 44
AE8
d
90 116Right-handed alpha
Helix 45
AE9
d
121 126Right-handed alpha
Helix 46
AF1
d
127 129Right-handed 310
Helix 47
AF2
d
146 158Right-handed alpha
Helix 48
AF3
d
159 167Right-handed 310
Helix 49
AF4
d
170 176Right-handed alpha
Helix 50
AF5
d
177 200Right-handed alpha
Helix 51
AF6
d
202 227Right-handed alpha
Helix 52
AF7
d
228 230Right-handed 310
Helix 53
AF8
d
233 239Right-handed alpha
Helix 54
AF9
d
251 258Right-handed alpha
Helix 55
AG1
d
260 269Right-handed alpha
Helix 56
AG2
d
271 281Right-handed alpha
Helix 57
AG3
d
289 305Right-handed alpha
Helix 58
AG4
d
306 308Right-handed 310
Helix 59
AG5
d
312 338Right-handed alpha
Helix 60
AG6
d
340 344Right-handed 310
Helix 61
AG7
e
6 23Right-handed alpha
Helix 62
AG8
e
24 27Right-handed 310
Helix 63
AG9
e
33 58Right-handed alpha
Helix 64
AH1
e
69 78Right-handed alpha
Helix 65
AH2
f
8 36Right-handed alpha
Helix 66
AH3
f
54 90Right-handed alpha
Helix 67
AH4
g
10 46Right-handed alpha
Helix 68
AH5
g
48 52Right-handed 310
Helix 69
AH6
g
53 55Right-handed 310
Helix 70
AH7
g
56 78Right-handed alpha
Helix 71
AH8
g
86 124Right-handed alpha
Helix 72
AH9
g
127 153Right-handed alpha
Helix 73
AI1
h
11 46Right-handed alpha
Helix 74
AI2
h
48 52Right-handed 310
Helix 75
AI3
h
56 78Right-handed alpha
Helix 76
AI4
h
86 124Right-handed alpha
Helix 77
AI5
h
127 154Right-handed alpha
Helix 78
AI6
i
10 48Right-handed alpha
Helix 79
AI7
i
49 52Right-handed 310
Helix 80
AI8
i
56 78Right-handed alpha
Helix 81
AI9
i
86 124Right-handed alpha
Helix 82
AJ1
i
126 154Right-handed alpha
Helix 83
AJ2
j
11 45Right-handed alpha
Helix 84
AJ3
j
48 52Right-handed 310
Helix 85
AJ4
j
53 55Right-handed 310
Helix 86
AJ5
j
56 78Right-handed alpha
Helix 87
AJ6
j
86 124Right-handed alpha
Helix 88
AJ7
j
126 154Right-handed alpha
Helix 89
AJ8
k
10 48Right-handed alpha
Helix 90
AJ9
k
49 52Right-handed 310
Helix 91
AK1
k
53 55Right-handed 310
Helix 92
AK2
k
56 80Right-handed alpha
Helix 93
AK3
k
86 124Right-handed alpha
Helix 94
AK4
k
127 154Right-handed alpha
Helix 95
AK5
l
11 48Right-handed alpha
Helix 96
AK6
l
49 55Right-handed 310
Helix 97
AK7
l
56 80Right-handed alpha
Helix 98
AK8
l
86 124Right-handed alpha
Helix 99
AK9
l
126 155Right-handed alpha
Helix 100
AL1
m
10 45Right-handed alpha
Helix 101
AL2
m
46 47Right-handed 310
Helix 102
AL3
m
48 55Right-handed 310
Helix 103
AL4
m
56 80Right-handed alpha
Helix 104
AL5
m
86 124Right-handed alpha
Helix 105
AL6
m
126 154Right-handed alpha
Helix 106
AL7
n
10 46Right-handed alpha
Helix 107
AL8
n
48 52Right-handed 310
Helix 108
AL9
n
56 79Right-handed alpha
Helix 109
AM1
n
86 123Right-handed alpha
Helix 110
AM2
n
126 154Right-handed alpha
Helix 111
AM3
o
11 48Right-handed alpha
Helix 112
AM4
o
51 56Right-handed alpha
Helix 113
AM5
o
56 80Right-handed alpha
Helix 114
AM6
o
86 124Right-handed alpha
Helix 115
AM7
o
127 154Right-handed alpha
Helix 116
AM8
p
302 330Right-handed alpha
Helix 117
AM9
p
338 343Right-handed alpha
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There are 3 sheets in PDB entry 6VQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
93 99first strand
Strand 2
H
106 112anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
36 38first strand
Strand 2
L
8 12parallel
Strand 3
L
63 67parallel
Strand 4
L
87 91parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
362 363first strand
Strand 2
a
821 822parallel
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