Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VQJ entry

There are 8 chains in PDB entry 6VQJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	THR 2	CYS 376
I	ALA 2	GLU 65
J	ALA 2	GLU 65
K	ALA 2	GLU 65
M	SER 3	LEU 69
N	SER 3	LEU 69
O	SER 3	LEU 69
a	LEU 12	THR 357

There are 23 helices in PDB entry 6VQJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	13	23	Right-handed alpha
Helix 2	AA2	G	27	32	Right-handed alpha
Helix 3	AA3	G	47	80	Right-handed alpha
Helix 4	AA4	G	97	104	Right-handed alpha
Helix 5	AA5	G	117	157	Right-handed alpha
Helix 6	AA6	G	193	203	Right-handed alpha
Helix 7	AA7	G	233	244	Right-handed alpha
Helix 8	AA8	G	254	311	Right-handed alpha
Helix 9	AA9	G	327	344	Right-handed alpha
Helix 10	AB1	I	4	65	Right-handed alpha
Helix 11	AB2	J	4	64	Right-handed alpha
Helix 12	AB3	K	4	65	Right-handed alpha
Helix 13	AB4	M	4	67	Right-handed alpha
Helix 14	AB5	N	4	68	Right-handed alpha
Helix 15	AB6	O	4	69	Right-handed alpha
Helix 16	AB7	a	19	33	Right-handed alpha
Helix 17	AB8	a	45	50	Right-handed alpha
Helix 18	AB9	a	51	75	Right-handed alpha
Helix 19	AC1	a	93	132	Right-handed alpha
Helix 20	AC2	a	179	189	Right-handed alpha
Helix 21	AC3	a	226	240	Right-handed alpha
Helix 22	AC4	a	251	309	Right-handed alpha
Helix 23	AC5	a	329	344	Right-handed alpha

There are 5 sheets in PDB entry 6VQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	38	first strand
Strand 2	G	317	322	anti-parallel
Strand 3	G	4	9	anti-parallel
Strand 4	G	370	374	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	218	first strand
Strand 2	G	222	230	anti-parallel
Strand 3	G	182	190	anti-parallel
Strand 4	G	248	249	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	36	37	first strand
Strand 2	a	318	324	anti-parallel
Strand 3	a	311	312	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	36	37	first strand
Strand 2	a	318	324	anti-parallel
Strand 3	a	13	18	anti-parallel
Strand 4	a	352	353	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	197	202	first strand
Strand 2	a	217	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VQJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQJ