Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VQK entry

There are 8 chains in PDB entry 6VQK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	THR 2	CYS 376
I	ALA 2	GLU 65
J	LEU 3	GLU 65
K	ALA 2	GLU 65
M	SER 3	LEU 69
N	SER 3	LEU 69
O	GLN 4	LEU 69
a	LEU 12	THR 357

There are 27 helices in PDB entry 6VQK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	14	22	Right-handed alpha
Helix 2	AA2	G	27	32	Right-handed 310
Helix 3	AA3	G	47	80	Right-handed alpha
Helix 4	AA4	G	97	104	Right-handed alpha
Helix 5	AA5	G	117	157	Right-handed alpha
Helix 6	AA6	G	165	169	Right-handed 310
Helix 7	AA7	G	171	175	Right-handed 310
Helix 8	AA8	G	193	201	Right-handed alpha
Helix 9	AA9	G	202	204	Right-handed 310
Helix 10	AB1	G	233	244	Right-handed alpha
Helix 11	AB2	G	254	311	Right-handed alpha
Helix 12	AB3	G	327	341	Right-handed alpha
Helix 13	AB4	I	4	65	Right-handed alpha
Helix 14	AB5	J	4	65	Right-handed alpha
Helix 15	AB6	K	4	65	Right-handed alpha
Helix 16	AB7	M	4	68	Right-handed alpha
Helix 17	AB8	N	4	69	Right-handed alpha
Helix 18	AB9	O	5	69	Right-handed alpha
Helix 19	AC1	a	19	33	Right-handed alpha
Helix 20	AC2	a	45	50	Right-handed alpha
Helix 21	AC3	a	51	75	Right-handed alpha
Helix 22	AC4	a	84	88	Right-handed 310
Helix 23	AC5	a	93	132	Right-handed alpha
Helix 24	AC6	a	179	191	Right-handed alpha
Helix 25	AC7	a	226	240	Right-handed alpha
Helix 26	AC8	a	251	309	Right-handed alpha
Helix 27	AC9	a	326	344	Right-handed alpha

There are 6 sheets in PDB entry 6VQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	37	first strand
Strand 2	G	317	322	anti-parallel
Strand 3	G	4	9	anti-parallel
Strand 4	G	370	374	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	218	first strand
Strand 2	G	222	230	anti-parallel
Strand 3	G	182	190	anti-parallel
Strand 4	G	247	249	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	36	38	first strand
Strand 2	a	318	324	anti-parallel
Strand 3	a	311	312	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	36	38	first strand
Strand 2	a	318	324	anti-parallel
Strand 3	a	13	18	anti-parallel
Strand 4	a	351	353	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	174	175	first strand
Strand 2	a	242	243	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	198	202	first strand
Strand 2	a	217	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VQK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQK