Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VQM entry

There are 2 chains in PDB entry 6VQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 117PRO 390
B
 LEU 117ASP 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6VQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 124Right-handed 310
Helix 2
AA2
A
169 183Right-handed alpha
Helix 3
AA3
A
212 220Right-handed alpha
Helix 4
AA4
A
225 246Right-handed alpha
Helix 5
AA5
A
254 256Right-handed 310
Helix 6
AA6
A
298 305Right-handed alpha
Helix 7
AA7
A
308 325Right-handed alpha
Helix 8
AA8
A
335 345Right-handed alpha
Helix 9
AA9
A
357 368Right-handed alpha
Helix 10
AB1
A
371 375Right-handed 310
Helix 11
AB2
A
377 388Right-handed alpha
Helix 12
AB3
B
122 124Right-handed 310
Helix 13
AB4
B
171 183Right-handed alpha
Helix 14
AB5
B
212 220Right-handed alpha
Helix 15
AB6
B
221 224Right-handed 310
Helix 16
AB7
B
225 246Right-handed alpha
Helix 17
AB8
B
254 256Right-handed 310
Helix 18
AB9
B
298 305Right-handed alpha
Helix 19
AC1
B
308 325Right-handed alpha
Helix 20
AC2
B
335 345Right-handed alpha
Helix 21
AC3
B
357 368Right-handed alpha
Helix 22
AC4
B
377 388Right-handed alpha
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There are 8 sheets in PDB entry 6VQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
192 196parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
152 159anti-parallel
Strand 5
A
138 146anti-parallel
Strand 6
A
126 135anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
275 276anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
266 268anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
306 307anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
192 196parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
152 159anti-parallel
Strand 5
B
139 146anti-parallel
Strand 6
B
126 134anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
B
275 276anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
B
266 268anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
306 307anti-parallel
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