Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VQQ entry

There are 5 chains in PDB entry 6VQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12ARG 290
B
 PRO 12ARG 293
C
 VAL 13ARG 290
D
 LEU 10LYS 292
E
 LYS 16LYS 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 6VQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 36Right-handed alpha
Helix 2
AA2
A
41 68Right-handed alpha
Helix 3
AA3
A
70 78Right-handed alpha
Helix 4
AA4
A
79 90Right-handed alpha
Helix 5
AA5
A
91 101Right-handed alpha
Helix 6
AA6
A
104 118Right-handed alpha
Helix 7
AA7
A
122 148Right-handed alpha
Helix 8
AA8
A
164 178Right-handed alpha
Helix 9
AA9
A
181 206Right-handed alpha
Helix 10
AB1
A
208 226Right-handed alpha
Helix 11
AB2
A
230 244Right-handed alpha
Helix 12
AB3
A
249 255Right-handed alpha
Helix 13
AB4
A
257 270Right-handed alpha
Helix 14
AB5
A
273 281Right-handed alpha
Helix 15
AB6
A
281 290Right-handed alpha
Helix 16
AB7
B
21 38Right-handed alpha
Helix 17
AB8
B
39 69Right-handed alpha
Helix 18
AB9
B
70 78Right-handed alpha
Helix 19
AC1
B
79 90Right-handed alpha
Helix 20
AC2
B
92 101Right-handed alpha
Helix 21
AC3
B
104 118Right-handed alpha
Helix 22
AC4
B
122 148Right-handed alpha
Helix 23
AC5
B
163 165Right-handed 310
Helix 24
AC6
B
166 178Right-handed alpha
Helix 25
AC7
B
181 207Right-handed alpha
Helix 26
AC8
B
208 227Right-handed alpha
Helix 27
AC9
B
230 244Right-handed alpha
Helix 28
AD1
B
250 255Right-handed alpha
Helix 29
AD2
B
257 271Right-handed alpha
Helix 30
AD3
B
274 290Right-handed alpha
Helix 31
AD4
B
291 293Right-handed 310
Helix 32
AD5
C
21 34Right-handed alpha
Helix 33
AD6
C
35 37Right-handed 310
Helix 34
AD7
C
41 68Right-handed alpha
Helix 35
AD8
C
70 78Right-handed alpha
Helix 36
AD9
C
80 90Right-handed alpha
Helix 37
AE1
C
91 99Right-handed alpha
Helix 38
AE2
C
104 118Right-handed alpha
Helix 39
AE3
C
122 148Right-handed alpha
Helix 40
AE4
C
166 178Right-handed alpha
Helix 41
AE5
C
181 206Right-handed alpha
Helix 42
AE6
C
210 227Right-handed alpha
Helix 43
AE7
C
230 244Right-handed alpha
Helix 44
AE8
C
250 255Right-handed alpha
Helix 45
AE9
C
257 271Right-handed alpha
Helix 46
AF1
C
273 289Right-handed alpha
Helix 47
AF2
D
21 35Right-handed alpha
Helix 48
AF3
D
39 69Right-handed alpha
Helix 49
AF4
D
70 78Right-handed alpha
Helix 50
AF5
D
79 90Right-handed alpha
Helix 51
AF6
D
91 100Right-handed alpha
Helix 52
AF7
D
104 118Right-handed alpha
Helix 53
AF8
D
122 147Right-handed alpha
Helix 54
AF9
D
149 153Right-handed 310
Helix 55
AG1
D
164 178Right-handed alpha
Helix 56
AG2
D
181 204Right-handed alpha
Helix 57
AG3
D
208 227Right-handed alpha
Helix 58
AG4
D
230 244Right-handed alpha
Helix 59
AG5
D
250 255Right-handed alpha
Helix 60
AG6
D
257 271Right-handed alpha
Helix 61
AG7
D
273 282Right-handed alpha
Helix 62
AG8
E
21 34Right-handed alpha
Helix 63
AG9
E
39 68Right-handed alpha
Helix 64
AH1
E
70 78Right-handed alpha
Helix 65
AH2
E
79 90Right-handed alpha
Helix 66
AH3
E
92 101Right-handed alpha
Helix 67
AH4
E
104 118Right-handed alpha
Helix 68
AH5
E
122 148Right-handed alpha
Helix 69
AH6
E
164 178Right-handed alpha
Helix 70
AH7
E
181 206Right-handed alpha
Helix 71
AH8
E
208 226Right-handed alpha
Helix 72
AH9
E
230 244Right-handed alpha
Helix 73
AI1
E
249 255Right-handed alpha
Helix 74
AI2
E
257 271Right-handed alpha
Helix 75
AI3
E
273 281Right-handed alpha
Helix 76
AI4
E
281 292Right-handed alpha
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There are no sheets in PDB entry 6VQQ
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