Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VQR entry

There are 5 chains in PDB entry 6VQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12LYS 292
B
 PRO 12ASN 296
C
 VAL 9ARG 290
D
 VAL 9LYS 292
E
 VAL 9ASN 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 6VQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 35Right-handed alpha
Helix 2
AA2
A
36 38Right-handed 310
Helix 3
AA3
A
39 68Right-handed alpha
Helix 4
AA4
A
70 78Right-handed alpha
Helix 5
AA5
A
79 90Right-handed alpha
Helix 6
AA6
A
91 101Right-handed alpha
Helix 7
AA7
A
104 119Right-handed alpha
Helix 8
AA8
A
122 148Right-handed alpha
Helix 9
AA9
A
164 177Right-handed alpha
Helix 10
AB1
A
181 206Right-handed alpha
Helix 11
AB2
A
208 226Right-handed alpha
Helix 12
AB3
A
230 244Right-handed alpha
Helix 13
AB4
A
249 255Right-handed alpha
Helix 14
AB5
A
257 271Right-handed alpha
Helix 15
AB6
A
274 281Right-handed alpha
Helix 16
AB7
A
281 291Right-handed alpha
Helix 17
AB8
B
21 35Right-handed alpha
Helix 18
AB9
B
39 68Right-handed alpha
Helix 19
AC1
B
70 78Right-handed alpha
Helix 20
AC2
B
79 90Right-handed alpha
Helix 21
AC3
B
91 101Right-handed alpha
Helix 22
AC4
B
104 118Right-handed alpha
Helix 23
AC5
B
122 148Right-handed alpha
Helix 24
AC6
B
164 179Right-handed alpha
Helix 25
AC7
B
181 207Right-handed alpha
Helix 26
AC8
B
208 226Right-handed alpha
Helix 27
AC9
B
230 245Right-handed alpha
Helix 28
AD1
B
250 255Right-handed alpha
Helix 29
AD2
B
257 271Right-handed alpha
Helix 30
AD3
B
275 296Right-handed alpha
Helix 31
AD4
C
21 35Right-handed alpha
Helix 32
AD5
C
41 68Right-handed alpha
Helix 33
AD6
C
70 78Right-handed alpha
Helix 34
AD7
C
79 90Right-handed alpha
Helix 35
AD8
C
91 99Right-handed alpha
Helix 36
AD9
C
104 118Right-handed alpha
Helix 37
AE1
C
122 148Right-handed alpha
Helix 38
AE2
C
164 176Right-handed alpha
Helix 39
AE3
C
181 206Right-handed alpha
Helix 40
AE4
C
208 226Right-handed alpha
Helix 41
AE5
C
231 244Right-handed alpha
Helix 42
AE6
C
249 255Right-handed alpha
Helix 43
AE7
C
257 271Right-handed alpha
Helix 44
AE8
C
274 281Right-handed alpha
Helix 45
AE9
C
281 290Right-handed alpha
Helix 46
AF1
D
23 35Right-handed alpha
Helix 47
AF2
D
39 68Right-handed alpha
Helix 48
AF3
D
70 78Right-handed alpha
Helix 49
AF4
D
79 90Right-handed alpha
Helix 50
AF5
D
92 100Right-handed alpha
Helix 51
AF6
D
104 118Right-handed alpha
Helix 52
AF7
D
122 148Right-handed alpha
Helix 53
AF8
D
166 179Right-handed alpha
Helix 54
AF9
D
181 207Right-handed alpha
Helix 55
AG1
D
208 227Right-handed alpha
Helix 56
AG2
D
230 244Right-handed alpha
Helix 57
AG3
D
250 255Right-handed alpha
Helix 58
AG4
D
257 271Right-handed alpha
Helix 59
AG5
D
273 281Right-handed alpha
Helix 60
AG6
D
284 291Right-handed alpha
Helix 61
AG7
E
23 36Right-handed alpha
Helix 62
AG8
E
39 68Right-handed alpha
Helix 63
AG9
E
70 78Right-handed alpha
Helix 64
AH1
E
80 90Right-handed alpha
Helix 65
AH2
E
91 101Right-handed alpha
Helix 66
AH3
E
104 118Right-handed alpha
Helix 67
AH4
E
122 148Right-handed alpha
Helix 68
AH5
E
164 179Right-handed alpha
Helix 69
AH6
E
181 206Right-handed alpha
Helix 70
AH7
E
209 226Right-handed alpha
Helix 71
AH8
E
230 244Right-handed alpha
Helix 72
AH9
E
257 271Right-handed alpha
Helix 73
AI1
E
274 290Right-handed alpha
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There are 2 sheets in PDB entry 6VQR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
A
13 16parallel
Strand 3
D
13 14parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
E
13 14parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il