Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VQU entry

There are 2 chains in PDB entry 6VQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 14GLU 602
B
 HIS 14GLU 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6VQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
32 69Right-handed alpha
Helix 3
AA3
A
75 127Right-handed alpha
Helix 4
AA4
A
128 135Right-handed alpha
Helix 5
AA5
A
136 161Right-handed alpha
Helix 6
AA6
A
161 178Right-handed alpha
Helix 7
AA7
A
181 230Right-handed alpha
Helix 8
AA8
A
230 238Right-handed alpha
Helix 9
AA9
A
239 293Right-handed alpha
Helix 10
AB1
A
298 312Right-handed alpha
Helix 11
AB2
A
313 316Right-handed 310
Helix 12
AB3
A
317 341Right-handed alpha
Helix 13
AB4
A
401 408Right-handed alpha
Helix 14
AB5
A
426 428Right-handed 310
Helix 15
AB6
A
429 436Right-handed alpha
Helix 16
AB7
A
450 456Right-handed alpha
Helix 17
AB8
A
457 459Right-handed 310
Helix 18
AB9
A
463 474Right-handed alpha
Helix 19
AC1
A
476 483Right-handed alpha
Helix 20
AC2
A
485 489Right-handed 310
Helix 21
AC3
A
499 515Right-handed alpha
Helix 22
AC4
A
529 544Right-handed alpha
Helix 23
AC5
A
555 560Right-handed 310
Helix 24
AC6
A
578 586Right-handed alpha
Helix 25
AC7
A
587 602Right-handed alpha
Helix 26
AC8
B
15 28Right-handed alpha
Helix 27
AC9
B
32 69Right-handed alpha
Helix 28
AD1
B
75 127Right-handed alpha
Helix 29
AD2
B
128 135Right-handed alpha
Helix 30
AD3
B
136 161Right-handed alpha
Helix 31
AD4
B
161 178Right-handed alpha
Helix 32
AD5
B
181 230Right-handed alpha
Helix 33
AD6
B
230 238Right-handed alpha
Helix 34
AD7
B
239 293Right-handed alpha
Helix 35
AD8
B
298 312Right-handed alpha
Helix 36
AD9
B
313 316Right-handed 310
Helix 37
AE1
B
317 341Right-handed alpha
Helix 38
AE2
B
401 408Right-handed alpha
Helix 39
AE3
B
426 428Right-handed 310
Helix 40
AE4
B
429 436Right-handed alpha
Helix 41
AE5
B
450 456Right-handed alpha
Helix 42
AE6
B
457 459Right-handed 310
Helix 43
AE7
B
463 474Right-handed alpha
Helix 44
AE8
B
476 483Right-handed alpha
Helix 45
AE9
B
485 489Right-handed 310
Helix 46
AF1
B
499 515Right-handed alpha
Helix 47
AF2
B
529 544Right-handed alpha
Helix 48
AF3
B
555 560Right-handed 310
Helix 49
AF4
B
578 586Right-handed alpha
Helix 50
AF5
B
587 602Right-handed alpha
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There are 4 sheets in PDB entry 6VQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 384first strand
Strand 2
A
361 368anti-parallel
Strand 3
A
415 420anti-parallel
Strand 4
A
423 424anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 440first strand
Strand 2
A
518 522parallel
Strand 3
A
548 552parallel
Strand 4
A
389 393parallel
Strand 5
A
564 569parallel
Strand 6
A
572 577anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 384first strand
Strand 2
B
361 368anti-parallel
Strand 3
B
415 420anti-parallel
Strand 4
B
423 424anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 440first strand
Strand 2
B
518 522parallel
Strand 3
B
548 552parallel
Strand 4
B
389 393parallel
Strand 5
B
564 569parallel
Strand 6
B
572 577anti-parallel
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