Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VQV entry

There are 12 chains in PDB entry 6VQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 68
B	MET 1	GLN 68
C	LEU 13	ASP 434
D	SER 2	VAL 322
E	LEU 24	ALA 357
F	LEU 24	GLU 356
G	ILE 23	GLU 356
H	ILE 23	ALA 357
I	LEU 24	GLU 356
J	LEU 24	LYS 360
K	MET 1	PHE 187
L	C 1	G 60

There are 66 helices in PDB entry 6VQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	36	Right-handed alpha
Helix 2	AA2	B	26	36	Right-handed alpha
Helix 3	AA3	C	115	126	Right-handed alpha
Helix 4	AA4	C	196	203	Right-handed alpha
Helix 5	AA5	C	204	206	Right-handed 310
Helix 6	AA6	C	212	224	Right-handed alpha
Helix 7	AA7	C	317	342	Right-handed alpha
Helix 8	AA8	C	383	386	Right-handed 310
Helix 9	AA9	C	387	397	Right-handed alpha
Helix 10	AB1	C	410	421	Right-handed alpha
Helix 11	AB2	C	426	430	Right-handed 310
Helix 12	AB3	D	33	46	Right-handed alpha
Helix 13	AB4	D	115	119	Right-handed 310
Helix 14	AB5	D	122	132	Right-handed alpha
Helix 15	AB6	D	176	180	Right-handed 310
Helix 16	AB7	D	189	196	Right-handed alpha
Helix 17	AB8	D	206	212	Right-handed alpha
Helix 18	AB9	D	297	302	Right-handed 310
Helix 19	AC1	E	129	147	Right-handed alpha
Helix 20	AC2	E	149	162	Right-handed alpha
Helix 21	AC3	E	210	223	Right-handed alpha
Helix 22	AC4	E	274	279	Right-handed alpha
Helix 23	AC5	E	280	282	Right-handed 310
Helix 24	AC6	E	321	331	Right-handed alpha
Helix 25	AC7	E	341	351	Right-handed alpha
Helix 26	AC8	F	81	89	Right-handed alpha
Helix 27	AC9	F	129	147	Right-handed alpha
Helix 28	AD1	F	149	162	Right-handed alpha
Helix 29	AD2	F	207	222	Right-handed alpha
Helix 30	AD3	F	274	283	Right-handed alpha
Helix 31	AD4	F	321	331	Right-handed alpha
Helix 32	AD5	F	337	351	Right-handed alpha
Helix 33	AD6	G	81	90	Right-handed alpha
Helix 34	AD7	G	129	147	Right-handed alpha
Helix 35	AD8	G	149	162	Right-handed alpha
Helix 36	AD9	G	196	200	Right-handed alpha
Helix 37	AE1	G	209	222	Right-handed alpha
Helix 38	AE2	G	274	283	Right-handed alpha
Helix 39	AE3	G	321	331	Right-handed alpha
Helix 40	AE4	G	337	350	Right-handed alpha
Helix 41	AE5	H	47	54	Right-handed 310
Helix 42	AE6	H	81	90	Right-handed alpha
Helix 43	AE7	H	129	147	Right-handed alpha
Helix 44	AE8	H	149	162	Right-handed alpha
Helix 45	AE9	H	207	222	Right-handed alpha
Helix 46	AF1	H	276	281	Right-handed alpha
Helix 47	AF2	H	321	331	Right-handed alpha
Helix 48	AF3	H	339	351	Right-handed alpha
Helix 49	AF4	I	50	57	Right-handed 310
Helix 50	AF5	I	81	91	Right-handed alpha
Helix 51	AF6	I	130	147	Right-handed alpha
Helix 52	AF7	I	149	162	Right-handed alpha
Helix 53	AF8	I	209	222	Right-handed alpha
Helix 54	AF9	I	274	281	Right-handed alpha
Helix 55	AG1	I	321	331	Right-handed alpha
Helix 56	AG2	I	337	351	Right-handed alpha
Helix 57	AG3	J	53	57	Right-handed 310
Helix 58	AG4	J	81	87	Right-handed alpha
Helix 59	AG5	J	129	145	Right-handed alpha
Helix 60	AG6	J	149	162	Right-handed alpha
Helix 61	AG7	J	208	223	Right-handed alpha
Helix 62	AG8	J	274	283	Right-handed alpha
Helix 63	AG9	J	321	331	Right-handed alpha
Helix 64	AH1	J	337	350	Right-handed alpha
Helix 65	AH2	K	64	69	Right-handed alpha
Helix 66	AH3	K	70	73	Right-handed 310

There are 41 sheets in PDB entry 6VQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	3	10	anti-parallel
Strand 3	A	44	48	anti-parallel
Strand 4	A	54	59	anti-parallel
Strand 5	A	65	66	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	3	10	anti-parallel
Strand 3	B	44	48	anti-parallel
Strand 4	B	54	59	anti-parallel
Strand 5	B	65	66	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	107	108	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	194	195	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	187	192	anti-parallel
Strand 3	D	277	290	parallel
Strand 4	D	184	188	anti-parallel
Strand 5	D	56	68	anti-parallel
Strand 6	D	102	113	anti-parallel
Strand 7	D	8	21	anti-parallel
Strand 8	D	157	158	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	145	first strand
Strand 2	D	8	21	anti-parallel
Strand 3	D	102	113	anti-parallel
Strand 4	D	56	68	anti-parallel
Strand 5	D	184	188	anti-parallel
Strand 6	D	277	290	anti-parallel
Strand 7	D	247	257	anti-parallel
Strand 8	D	313	317	anti-parallel
Strand 9	D	304	308	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	C	261	267	parallel
Strand 3	C	239	242	anti-parallel
Strand 4	D	79	81	parallel
Strand 5	D	70	71	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	240	241	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	E	352	353	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	108	117	anti-parallel
Strand 3	E	227	235	anti-parallel
Strand 4	E	176	183	anti-parallel
Strand 5	E	194	195	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	191	first strand
Strand 2	E	176	183	anti-parallel
Strand 3	E	227	235	anti-parallel
Strand 4	E	108	117	anti-parallel
Strand 5	E	41	46	anti-parallel
Strand 6	E	272	273	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	286	first strand
Strand 2	E	298	299	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	127	first strand
Strand 2	F	30	32	anti-parallel
Strand 3	F	352	354	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	108	117	anti-parallel
Strand 3	F	227	236	anti-parallel
Strand 4	F	176	183	anti-parallel
Strand 5	F	188	195	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	108	117	anti-parallel
Strand 3	F	41	46	anti-parallel
Strand 4	F	272	273	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	68	first strand
Strand 2	F	94	101	anti-parallel
Strand 3	F	242	243	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	248	first strand
Strand 2	F	263	264	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	305	306	first strand
Strand 2	F	311	312	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	126	127	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	108	117	anti-parallel
Strand 3	G	227	236	anti-parallel
Strand 4	G	176	183	anti-parallel
Strand 5	G	188	195	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	108	117	anti-parallel
Strand 3	G	41	46	anti-parallel
Strand 4	G	272	273	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	69	first strand
Strand 2	G	93	100	anti-parallel
Strand 3	G	260	264	parallel
Strand 4	G	247	248	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	286	first strand
Strand 2	G	298	299	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	305	306	first strand
Strand 2	G	311	312	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	127	first strand
Strand 2	H	30	32	anti-parallel
Strand 3	H	352	353	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	108	117	anti-parallel
Strand 3	H	227	236	anti-parallel
Strand 4	H	175	182	anti-parallel
Strand 5	H	191	195	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	108	117	anti-parallel
Strand 3	H	41	46	anti-parallel
Strand 4	H	272	273	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	69	first strand
Strand 2	H	93	101	anti-parallel
Strand 3	H	242	243	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	247	248	first strand
Strand 2	H	263	264	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	284	286	first strand
Strand 2	H	298	299	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	305	306	first strand
Strand 2	H	311	312	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	31	first strand
Strand 2	I	126	127	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	37	38	first strand
Strand 2	I	108	117	anti-parallel
Strand 3	I	227	236	anti-parallel
Strand 4	I	176	183	anti-parallel
Strand 5	I	188	195	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	37	38	first strand
Strand 2	I	108	117	anti-parallel
Strand 3	I	41	46	anti-parallel
Strand 4	I	272	273	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	62	68	first strand
Strand 2	I	94	101	anti-parallel
Strand 3	I	242	243	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	62	68	first strand
Strand 2	I	94	101	anti-parallel
Strand 3	I	260	262	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	305	306	first strand
Strand 2	I	311	312	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	127	first strand
Strand 2	J	30	32	anti-parallel
Strand 3	J	352	354	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	38	first strand
Strand 2	J	108	117	anti-parallel
Strand 3	J	227	236	anti-parallel
Strand 4	J	175	183	anti-parallel
Strand 5	J	194	195	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	188	191	first strand
Strand 2	J	175	183	anti-parallel
Strand 3	J	227	236	anti-parallel
Strand 4	J	108	117	anti-parallel
Strand 5	J	41	46	anti-parallel
Strand 6	J	272	273	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	62	69	first strand
Strand 2	J	93	101	anti-parallel
Strand 3	J	242	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQV