Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VQW entry

There are 11 chains in PDB entry 6VQW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 3	VAL 322
D	LEU 24	GLU 356
E	LEU 24	GLU 356
F	ILE 23	GLU 356
G	ILE 23	ALA 357
H	LEU 24	GLU 356
I	THR 26	GLY 355
J	LEU 9	ASN 108
A	THR 11	PHE 90
B	ALA 175	ASP 434
K	C 1	G 40

There are 60 helices in PDB entry 6VQW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	33	48	Right-handed alpha
Helix 2	AA2	C	124	134	Right-handed alpha
Helix 3	AA3	C	165	178	Right-handed alpha
Helix 4	AA4	C	189	200	Right-handed alpha
Helix 5	AA5	C	206	213	Right-handed alpha
Helix 6	AA6	D	50	54	Right-handed 310
Helix 7	AA7	D	129	147	Right-handed alpha
Helix 8	AA8	D	149	162	Right-handed alpha
Helix 9	AA9	D	207	223	Right-handed alpha
Helix 10	AB1	D	274	282	Right-handed alpha
Helix 11	AB2	D	322	331	Right-handed alpha
Helix 12	AB3	D	337	351	Right-handed alpha
Helix 13	AB4	E	129	145	Right-handed alpha
Helix 14	AB5	E	149	162	Right-handed alpha
Helix 15	AB6	E	208	222	Right-handed alpha
Helix 16	AB7	E	274	283	Right-handed alpha
Helix 17	AB8	E	322	331	Right-handed alpha
Helix 18	AB9	E	337	351	Right-handed alpha
Helix 19	AC1	F	81	91	Right-handed alpha
Helix 20	AC2	F	129	147	Right-handed alpha
Helix 21	AC3	F	151	162	Right-handed alpha
Helix 22	AC4	F	209	222	Right-handed alpha
Helix 23	AC5	F	276	283	Right-handed alpha
Helix 24	AC6	F	322	331	Right-handed alpha
Helix 25	AC7	F	337	351	Right-handed alpha
Helix 26	AC8	G	47	51	Right-handed 310
Helix 27	AC9	G	81	91	Right-handed alpha
Helix 28	AD1	G	129	147	Right-handed alpha
Helix 29	AD2	G	155	162	Right-handed alpha
Helix 30	AD3	G	211	223	Right-handed alpha
Helix 31	AD4	G	322	327	Right-handed alpha
Helix 32	AD5	G	337	350	Right-handed alpha
Helix 33	AD6	H	81	90	Right-handed alpha
Helix 34	AD7	H	129	147	Right-handed alpha
Helix 35	AD8	H	149	162	Right-handed alpha
Helix 36	AD9	H	209	222	Right-handed alpha
Helix 37	AE1	H	274	283	Right-handed alpha
Helix 38	AE2	H	292	296	Right-handed 310
Helix 39	AE3	H	322	327	Right-handed alpha
Helix 40	AE4	H	337	350	Right-handed alpha
Helix 41	AE5	I	50	54	Right-handed 310
Helix 42	AE6	I	81	90	Right-handed alpha
Helix 43	AE7	I	131	145	Right-handed alpha
Helix 44	AE8	I	151	157	Right-handed alpha
Helix 45	AE9	I	157	162	Right-handed alpha
Helix 46	AF1	I	209	223	Right-handed alpha
Helix 47	AF2	I	274	283	Right-handed alpha
Helix 48	AF3	I	321	331	Right-handed alpha
Helix 49	AF4	I	337	351	Right-handed alpha
Helix 50	AF5	J	16	24	Right-handed alpha
Helix 51	AF6	J	63	69	Right-handed alpha
Helix 52	AF7	J	73	77	Right-handed 310
Helix 53	AF8	A	66	73	Right-handed alpha
Helix 54	AF9	B	199	211	Right-handed alpha
Helix 55	AG1	B	212	217	Right-handed alpha
Helix 56	AG2	B	294	303	Right-handed alpha
Helix 57	AG3	B	304	306	Right-handed 310
Helix 58	AG4	B	319	339	Right-handed alpha
Helix 59	AG5	B	385	395	Right-handed alpha
Helix 60	AG6	B	416	433	Right-handed alpha

There are 38 sheets in PDB entry 6VQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	11	first strand
Strand 2	C	157	160	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	103	107	anti-parallel
Strand 3	C	15	18	anti-parallel
Strand 4	C	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	C	277	289	anti-parallel
Strand 3	C	248	257	anti-parallel
Strand 4	C	313	315	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	C	277	289	anti-parallel
Strand 3	B	187	192	parallel
Strand 4	B	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	108	117	anti-parallel
Strand 3	D	227	236	anti-parallel
Strand 4	D	176	183	anti-parallel
Strand 5	D	188	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	98	100	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	248	first strand
Strand 2	D	263	264	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	108	117	anti-parallel
Strand 3	E	227	236	anti-parallel
Strand 4	E	175	182	anti-parallel
Strand 5	E	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	68	first strand
Strand 2	E	94	100	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	127	first strand
Strand 2	F	30	32	anti-parallel
Strand 3	F	352	353	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	108	117	anti-parallel
Strand 3	F	227	236	anti-parallel
Strand 4	F	176	183	anti-parallel
Strand 5	F	188	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	108	117	anti-parallel
Strand 3	F	41	46	anti-parallel
Strand 4	F	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	64	first strand
Strand 2	F	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	94	95	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	286	first strand
Strand 2	F	298	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	32	first strand
Strand 2	G	352	353	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	108	117	anti-parallel
Strand 3	G	42	46	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	108	117	anti-parallel
Strand 3	G	227	236	anti-parallel
Strand 4	G	176	182	anti-parallel
Strand 5	G	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	286	first strand
Strand 2	G	298	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	32	first strand
Strand 2	H	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	108	117	anti-parallel
Strand 3	H	227	235	anti-parallel
Strand 4	H	176	183	anti-parallel
Strand 5	H	188	193	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	108	117	anti-parallel
Strand 3	H	41	46	anti-parallel
Strand 4	H	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	98	101	anti-parallel
Strand 3	H	242	243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	284	286	first strand
Strand 2	H	298	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	304	305	first strand
Strand 2	H	312	313	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	32	first strand
Strand 2	I	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	46	first strand
Strand 2	I	108	116	anti-parallel
Strand 3	I	228	236	anti-parallel
Strand 4	I	177	183	anti-parallel
Strand 5	I	188	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	69	first strand
Strand 2	I	93	95	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	247	248	first strand
Strand 2	I	263	264	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	284	286	first strand
Strand 2	I	298	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	43	first strand
Strand 2	J	59	60	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	45	46	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	262	264	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VQW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQW