Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VQX entry

There are 11 chains in PDB entry 6VQX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 97
B	LEU 13	ASP 434
C	VAL 3	VAL 322
D	LEU 24	GLU 356
E	LEU 24	GLU 356
F	ILE 23	GLU 356
G	ILE 23	ALA 357
H	LEU 24	GLU 356
I	LEU 24	GLU 356
J	MET 1	PHE 187
K	C 1	G 60

There are 77 helices in PDB entry 6VQX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	23	Right-handed alpha
Helix 2	AA2	A	30	46	Right-handed alpha
Helix 3	AA3	A	52	56	Right-handed 310
Helix 4	AA4	A	58	70	Right-handed alpha
Helix 5	AA5	A	76	94	Right-handed alpha
Helix 6	AA6	B	14	29	Right-handed alpha
Helix 7	AA7	B	36	41	Right-handed alpha
Helix 8	AA8	B	42	47	Right-handed alpha
Helix 9	AA9	B	50	56	Right-handed alpha
Helix 10	AB1	B	96	100	Right-handed 310
Helix 11	AB2	B	112	114	Right-handed 310
Helix 12	AB3	B	115	121	Right-handed alpha
Helix 13	AB4	B	122	124	Right-handed 310
Helix 14	AB5	B	155	160	Right-handed alpha
Helix 15	AB6	B	196	211	Right-handed alpha
Helix 16	AB7	B	212	225	Right-handed alpha
Helix 17	AB8	B	247	251	Right-handed 310
Helix 18	AB9	B	294	307	Right-handed alpha
Helix 19	AC1	B	317	342	Right-handed alpha
Helix 20	AC2	B	358	363	Right-handed alpha
Helix 21	AC3	B	376	380	Right-handed 310
Helix 22	AC4	B	385	399	Right-handed alpha
Helix 23	AC5	B	409	431	Right-handed alpha
Helix 24	AC6	C	33	48	Right-handed alpha
Helix 25	AC7	C	116	121	Right-handed alpha
Helix 26	AC8	C	122	135	Right-handed alpha
Helix 27	AC9	C	165	180	Right-handed alpha
Helix 28	AD1	C	189	200	Right-handed alpha
Helix 29	AD2	C	207	212	Right-handed alpha
Helix 30	AD3	C	297	302	Right-handed 310
Helix 31	AD4	D	129	147	Right-handed alpha
Helix 32	AD5	D	149	162	Right-handed alpha
Helix 33	AD6	D	207	222	Right-handed alpha
Helix 34	AD7	D	274	280	Right-handed alpha
Helix 35	AD8	D	321	330	Right-handed alpha
Helix 36	AD9	D	337	349	Right-handed alpha
Helix 37	AE1	E	50	54	Right-handed 310
Helix 38	AE2	E	81	91	Right-handed alpha
Helix 39	AE3	E	129	147	Right-handed alpha
Helix 40	AE4	E	149	162	Right-handed alpha
Helix 41	AE5	E	209	222	Right-handed alpha
Helix 42	AE6	E	274	283	Right-handed alpha
Helix 43	AE7	E	321	331	Right-handed alpha
Helix 44	AE8	E	337	350	Right-handed alpha
Helix 45	AE9	F	49	53	Right-handed 310
Helix 46	AF1	F	81	91	Right-handed alpha
Helix 47	AF2	F	129	147	Right-handed alpha
Helix 48	AF3	F	149	162	Right-handed alpha
Helix 49	AF4	F	210	223	Right-handed alpha
Helix 50	AF5	F	274	283	Right-handed alpha
Helix 51	AF6	F	292	296	Right-handed 310
Helix 52	AF7	F	321	331	Right-handed alpha
Helix 53	AF8	F	337	350	Right-handed alpha
Helix 54	AF9	G	47	51	Right-handed 310
Helix 55	AG1	G	81	90	Right-handed alpha
Helix 56	AG2	G	129	147	Right-handed alpha
Helix 57	AG3	G	149	158	Right-handed alpha
Helix 58	AG4	G	207	222	Right-handed alpha
Helix 59	AG5	G	321	329	Right-handed alpha
Helix 60	AG6	G	337	351	Right-handed alpha
Helix 61	AG7	H	52	57	Right-handed 310
Helix 62	AG8	H	81	89	Right-handed alpha
Helix 63	AG9	H	129	147	Right-handed alpha
Helix 64	AH1	H	149	162	Right-handed alpha
Helix 65	AH2	H	207	222	Right-handed alpha
Helix 66	AH3	H	274	283	Right-handed alpha
Helix 67	AH4	H	321	331	Right-handed alpha
Helix 68	AH5	H	337	351	Right-handed alpha
Helix 69	AH6	I	50	54	Right-handed 310
Helix 70	AH7	I	81	89	Right-handed alpha
Helix 71	AH8	I	129	147	Right-handed alpha
Helix 72	AH9	I	149	162	Right-handed alpha
Helix 73	AI1	I	207	223	Right-handed alpha
Helix 74	AI2	I	274	283	Right-handed alpha
Helix 75	AI3	I	321	331	Right-handed alpha
Helix 76	AI4	I	337	351	Right-handed alpha
Helix 77	AI5	J	63	69	Right-handed alpha

There are 38 sheets in PDB entry 6VQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	108	110	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	194	195	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	187	192	anti-parallel
Strand 3	C	277	290	parallel
Strand 4	C	185	188	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	187	192	anti-parallel
Strand 3	C	277	290	parallel
Strand 4	C	247	257	anti-parallel
Strand 5	C	313	317	anti-parallel
Strand 6	C	304	306	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	B	261	267	parallel
Strand 3	B	239	242	anti-parallel
Strand 4	C	79	83	parallel
Strand 5	C	70	71	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	B	261	267	parallel
Strand 3	B	239	242	anti-parallel
Strand 4	C	79	83	parallel
Strand 5	I	249	250	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	103	113	anti-parallel
Strand 3	C	8	20	anti-parallel
Strand 4	C	143	145	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	103	113	anti-parallel
Strand 3	C	8	20	anti-parallel
Strand 4	C	157	160	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	240	241	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	127	first strand
Strand 2	D	30	32	anti-parallel
Strand 3	D	352	354	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	108	117	anti-parallel
Strand 3	D	227	236	anti-parallel
Strand 4	D	175	182	anti-parallel
Strand 5	D	190	195	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	108	117	anti-parallel
Strand 3	D	41	44	anti-parallel
Strand 4	D	272	273	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	65	first strand
Strand 2	D	97	99	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	286	first strand
Strand 2	D	298	299	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	127	first strand
Strand 2	E	29	32	anti-parallel
Strand 3	E	352	355	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	195	first strand
Strand 2	E	176	183	anti-parallel
Strand 3	E	227	235	anti-parallel
Strand 4	E	108	117	anti-parallel
Strand 5	E	41	46	anti-parallel
Strand 6	E	272	273	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	69	first strand
Strand 2	E	93	99	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	126	127	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	108	117	anti-parallel
Strand 3	F	227	236	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	F	190	193	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	108	117	anti-parallel
Strand 3	F	41	46	anti-parallel
Strand 4	F	272	273	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	68	first strand
Strand 2	F	94	100	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	286	first strand
Strand 2	F	298	299	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	108	117	anti-parallel
Strand 3	G	227	236	anti-parallel
Strand 4	G	176	183	anti-parallel
Strand 5	G	188	195	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	108	117	anti-parallel
Strand 3	G	41	46	anti-parallel
Strand 4	G	272	273	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	68	first strand
Strand 2	G	94	99	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	286	first strand
Strand 2	G	298	299	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	305	306	first strand
Strand 2	G	311	312	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	127	first strand
Strand 2	H	30	32	anti-parallel
Strand 3	H	352	354	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	108	117	anti-parallel
Strand 3	H	227	236	anti-parallel
Strand 4	H	176	182	anti-parallel
Strand 5	H	191	195	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	108	117	anti-parallel
Strand 3	H	41	46	anti-parallel
Strand 4	H	272	273	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	67	first strand
Strand 2	H	95	101	anti-parallel
Strand 3	H	242	243	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	67	first strand
Strand 2	H	95	101	anti-parallel
Strand 3	H	259	262	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	127	first strand
Strand 2	I	30	32	anti-parallel
Strand 3	I	352	354	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	116	117	first strand
Strand 2	I	227	236	anti-parallel
Strand 3	I	176	182	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	116	117	first strand
Strand 2	I	227	236	anti-parallel
Strand 3	I	108	113	anti-parallel
Strand 4	I	41	46	anti-parallel
Strand 5	I	270	273	anti-parallel
Strand 6	I	266	267	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	62	68	first strand
Strand 2	I	94	101	anti-parallel
Strand 3	I	242	243	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	305	306	first strand
Strand 2	I	311	312	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	5	first strand
Strand 2	J	60	62	anti-parallel
Strand 3	J	41	42	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VQX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VQX